XLOC_012864 (tcf25)


Basic Information

Item Value
gene id XLOC_012864
gene name tcf25
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31117136 ~ 31206658 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025672
TCTGGGTTGATGTCATATCTTCATACTCCATCGCAGTAGGTGGCAGCGCCCTATTGAGTGTTACCTTACAACTCGCCTTTAAGCTAAACGAAGAAGAAGACCAGGAAGGGGTAGAGGACTAGTAAGCCTGTTTGTTTCAGTGCAAGTTTGTGAAACGAGTGCGCTAGTTCCTATGGGCTAGATTCGTGGTTATTGATAAGTTGTGCTGACGTCCAACATGTCGAGTCGCGCTCTACGTAGGCTGAAGGGCGAACAACGCGCTCAGGCCGTGTTACAAGAGCACGAGCTTATTAAGGAAGATGACAAAGATGAAGAAGAGCAGATGAAGATTGCCGAACAAACAACCCGTAAACCGAGGAACTTCAGCAGCTTATTTGAACTGATAGGAGAGGCTGATGTGGAAGCATGTCTGTCAGATGTGGAACAGGCAGAAAAAAACAGTGATGGACAACAAGAAGCTCATCTGGGGAAAGATGCTGAAAAGGATGATTTTGGCACCGAAGATGGTATTGATGCTCTATTAGAAATTCCTGAGAAGAGCAAAGGCTTGTCTTGTCAAAGTGCTGAGAATAGTGCTTCTGAACGCAGACCCGTACTGTATGTTGAACACAGGAATTTGAATTCAGAGACAGAGCTGAAGAGGTTTTTTGGAGCACGGGCTGTTCTTGGACACCAGagATCAAAACAGAGGCAGAGACAGTTTCATCGATGCACTTGGATGACTGTTTTTAAAGACACTTGGCCCCGCTTTAGTCGACCAGGTATCTCAATGAGTCTAGTGGAGTCTAAAGATGGAGTTCAGCATTTCACATTTGAACATAATCATGACTATCAGCAAGTTCAGTTCAAGTTTTTTGAGGTGGTGGAGTCAATGGACCCTAATAACATTGTGGTTCTCCTACAGATCAACCCATATCATATCGATTCACTTTTGCAGCTGTCAGATGTATGTCGTATGCAGGAAGATCAAGAGACTGCCAGAGATCTCATTGAAAGGGCTTTGTACAGTTTTGAGTGTGCATTCCACCCTGTGTTCAGCTTAACATCAGGCACGTGTCGGCTGGACTACTGCAGACCAGAGAACAGGGGTTTTTATTTGGCACTGTTCAAGCACATACAATTTCTGGAGAAGAGAGGTTGTCCCCGCACAGCCCTGGAGTACTGTAAACTGATTCTGAGtctgGACCCAGAAAATGACCCCCTCTGTATGCTGCTTTTCTTTGACTTCCTCTGCTTGCGTTGTCATGAGTACAGCACTCTTATTCGACTCTATGAGGAGTGGGAgGTCCATCGAAATCTTTCCCAGCTGccaaacttttcattttctgtggCTCTTTCCTATTTTCATCTGAGCCAAGATGAAGACATTTCAACTGTGGAGAGCCAACAACTAAAGCAAAAGTCCAATGTGCTACTGCAAAATGCTCTCATCATGTTTCCTGGGGCACTGATGCCACTTTTGGACTTATGCACAGTTCACCTGGAGGCTGCGGTGTCTTCTCACATATTCTTTGGACCTTCAAGTCAAATCGAACAGCCACCTGCACTTTCTGAGTTGGTGTCCCTATATGTGGGCCGGTGTCATAGCCTGTGGAAAGAGGCTGGAGTAATGGACTGGTTGGAAGAGAATGTCAGAGAAGTGCTAAAAAGAGTTGACACACATGACCCTTTTGTAGAAGACTGCCAAAACAAGAGGAAGCAGAGATACCAGAGTGCTCCCAGGAACATCCATAGGCATGTGCTGTTGTCTGAGATTAAGGAGGCAACAGCTACTCTTCCACTAGAAGTGACCACTCAGCCAGGAATGGGATTTGACCCTCTTCCTCCTCTGAACTCCATTGTGTCTTACACCAGACCAGAAAGGCAGAGCATGGGGGCTTCAAATGAAAgcacattttctttgtttttccgTTCATTGCTACCAAACTTCAACCTACAGAGGCCTGAAGAAAGACAGGATGTTGCCCGTGCTGGTGAACTAAATCAAGAAGTTAACAGACTCATGGTTGCCATGAGGGACATGTTGGCTAACATCCAGTTTCATGAACCTCAGTGGGAGGACAACCAAGACAGAGACGAGGAGGAATGGGACTAA
>TCONS_00025673
GGTTATTGATAAGTTGTGCTGACGTCCAACATGTCGAGTCGCGCTCTACGTAGGCTGAAGGGCGAACAACGCGCTCAGGCCGTGTTACAAGAGCACGAGCTTATTAAGGAAGATGACAAAGATGAAGAAGAGCAGATGAAGATTGCCGAACAAACAACCCGTAAACCGAGGAACTTCAGCAGCTTATTTGAACTGATAGGAGAGGCTGATGTGGAAGCATGTCTGTCAGATGTGGAACAGGCAGAAAAAAACAGTGATGGACAACAAGAAGCTCATCTGGGGAAAGATGCTGAAAAGAAAgagaaatcaaacaaaaagaagaagaagaagaagaaaaataaggaTTCAGCTATAAGcGATGATTTTGGCACCGAAGATGGTATTGATGCTCTATTAGAAATTCCTGAGAAGAGCAAAGGCTTGTCTTGTCAAAGTGCTGAGAATAGTGCTTCTGAACGCAGACCCGTACTGTATGTTGAACACAGGAATTTGAATTCAGAGACAGAGCTGAAGAGGTTTTTTGGAGCACGGGCTGTTCTTGGACACCAGagATCAAAACAGAGGCAGAGACAGTTTCATCGATGCACTTGGATGACTGTTTTTAAAGACACTTGGCCCCGCTTTAGTCGACCAGGTATCTCAATGAGTCTAGTGGAGTCTAAAGATGGAGTTCAGCATTTCACATTTGAACATAATCATGACTATCAGCAAGTTCAGTTCAAGTTTTTTGAGGTGGTGGAGTCAATGGACCCTAATAACATTGTGGTTCTCCTACAGATCAACCCATATCATATCGATTCACTTTTGCAGCTGTCAGATGTATGTCGTATGCAGGAAGATCAAGAGACTGCCAGAGATCTCATTGAAAGGGCTTTGTACAGTTTTGAGTGTGCATTCCACCCTGTGTTCAGCTTAACATCAGGCACGTGTCGGCTGGACTACTGCAGACCAGAGAACAGGGGTTTTTATTTGGCACTGTTCAAGCACATACAATTTCTGGAGAAGAGAGGTTGTCCCCGCACAGCCCTGGAGTACTGTAAACTGATTCTGAGtctgGACCCAGAAAATGACCCCCTCTGTATGCTGCTTTTCTTTGACTTCCTCTGCTTGCGTTGTCATGAGTACAGCACTCTTATTCGACTCTATGAGGAGTGGGAgGTCCATCGAAATCTTTCCCAGCTGccaaacttttcattttctgtggCTCTTTCCTATTTTCATCTGAGCCAAGATGAAGACATTTCAACTGTGGAGAGCCAACAACTAAAGCAAAAGTCCAATGTGCTACTGCAAAATGCTCTCATCATGTTTCCTGGGGCACTGATGCCACTTTTGGACTTATGCACAGTTCACCTGGAGGCTGCGGTGTCTTCTCACATATTCTTTGGACCTTCAAGTCAAATCGAACAGCCACCTGCACTTTCTGAGTTGGTGTCCCTATATGTGGGCCGGTGTCATAGCCTGTGGAAAGAGGCTGGAGTAATGGACTGGTTGGAAGAGAATGTCAGAGAAGTGCTAAAAAGAGTTGACACACATGACCCTTTTGTAGAAGACTGCCAAAACAACTCTTTGATTTTCAGGAGGAAGCAGAGATACCAGAGTGCTCCCAGGAACATCCATAGGCATGTGCTGTTGTCTGAGATTAAGGAGGCAACAGCTACTCTTCCACTAGAAGTGACCACTCAGCCAGGAATGGGATTTGACCCTCTTCCTCCTCTGAACTCCATTGTGTCTTACACCAGACCAGAAAGGCAGAGCATGGGGGCTTCAAATGAAAgcacattttctttgtttttccgTTCATTGCTACCAAACTTCAACCTACAGAGGCCTGAAGAAAGACAGGATGTTGCCCGTGCTGGTGAACTAAATCAAGAAGTTAACAGACTCATGGTTGCCATGAGGGACATGTTGGCTAACATCCAGTTTCATGAACCTCAGTGGGAGGACAACCAAGACAGAGACGAGGAGGAATGGGACTAACAGATTAACAAGGTTGTGATTTTTCAAATGAAGTTGAATGACAAATTGAAAAAGCACAAAAGAGGAATTTGTATGATCTGCTCACCTTAATTTTGAATAAATCCAAATTATTCATACCTTGTGGACAACTGAATTGTGCTCTACATATTTTTATATGAAGGGCCAAACATACTGATGTATGTCTTAAATGTCTTAAAGgttcgttttttttattattattattattaaaaaccttTTAACCT
>TCONS_00026908
GATAGGAGAGGCTGATGTGGAAGCATGTCTGTCAGATGTGGAACAGGCAGAAAAAAACAGTGATGGACAACAAGAAGCTCATCTGGGGAAAGATGCTGAAAAGAAAgagaaatcaaacaaaaagaagaagaagaagaagaaaaataaggaTTCAGCTATAAGcgtaatataatatatagagtttaatttttatgtttgtattatttgggttttttaccaaatctagtttaattccatgtcaacagctcctttagaaatattttttccagaaaaaaaaaaaacatgacgtatTCAATGGTTATTTCTCCCACTGTAAATATAaactctaaagcataaaaacagcaTAATATGTATTCAGATATGTAAGAAACACCTAAGAAACAGCTAAACAACAGCTAAGTAATATTGTTAATTTGAAAATACTAATGCTAAATGTCAGTTATTCTTTGTTCCTCTAAACCACAACGTATGTCATTTTAGTCTTGAAGGCTGTATAAGTGTGTGGGGGTGGCTAAATATGCAACCTCAAGAGGACAGTAGCAGCCTTCAAGATGAGATATAGATTCAGAGTTGGGCTTTTACATAAGGTGGCTTTTAATTAGCAGATAATATACATATGACAAGCGTAAACATTATGGCAGTAAATGTCTAACCATATGCAAAATATATGATT
>TCONS_00026909
GAACGCATGCAGTTTTTACCACACCAAACTCACACACCTTTGAGGTCGCTAAAGGGTTCAACATATTTAATTGAAAGAGGAAGCAGAGATACCAGAGTGCTCCCAGGAACATCCATAGGCATGTGCTGTTGTCTGAGATTAAGGAGGCAACAGCTACTCTTCCACTAGAAGTGACCACTCAGCCAGGAATGGGATTTGACCCTCTTCCTCCTCTGAACTCCATTGTGTCTTACACCAGACCAGAAAGGCAGAGCATGGGGGCTTCAAATGAAAgcacattttctttgtttttccgTTCATTGCTACCAAACTTCAACCTACAGAGGCCTGAAGAAAGACAGGATGTTGCCCGTGCTGGTGAACTAAATCAAGAAGTTAACAGACTCATGGTTGCCATGAGGGACATGTTGGCTAACATCCAGTTTCATGAACCTCAGTGGGAGGACAACCAAGACAGAGACGAGGAGGAATGGGACTAACAGATTAACAAGGTTGTGATTTTTCAAATGAAGTTGAATGACAAATTGAAAAAGCAC

Function

symbol description
tcf25 Predicted to be part of RQC complex. Is expressed in lens; mesoderm; notochord; and somite. Orthologous to human TCF25 (transcription factor 25).

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040905-2 Predicted to be part of RQC complex. Is expressed in lens; mesoderm; notochord; and somite. Orthologous to human TCF25 (transcription factor 25).

Ensembl:

ensembl_id ENSDARG00000040861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025672 False 2095 mRNA 0.46 17 31117136 31206416
TCONS_00025673 False 2225 mRNA 0.43 18 31117323 31206658
TCONS_00026908 False 673 lncRNA 0.32 2 31151805 31152607
TCONS_00026909 True 536 lncRNA 0.45 5 31188957 31206473

Neighbor

gene id symbol gene type direction distance location
XLOC_012863 NA coding upstream 41517 31073243 ~ 31075619 (+)
XLOC_012862 mvda coding upstream 48381 31056645 ~ 31068755 (+)
XLOC_012861 cd151l coding upstream 93689 30998472 ~ 31023447 (+)
XLOC_012860 mthfsd coding upstream 164854 30878196 ~ 30952282 (+)
XLOC_012859 foxf1 coding upstream 266771 30847237 ~ 30850365 (+)
XLOC_012865 NA coding downstream 74192 31280850 ~ 31459487 (+)
XLOC_012866 NA coding downstream 312920 31519578 ~ 31521691 (+)
XLOC_012867 dhx36 coding downstream 404086 31610744 ~ 31837760 (+)
XLOC_012868 BX908763.1 coding downstream 638846 31845504 ~ 31846556 (+)
XLOC_012869 NA coding downstream 665363 31872021 ~ 31872676 (+)
XLOC_012854 NA non-coding upstream 985305 30129771 ~ 30131831 (+)
XLOC_012849 CT025546.2 non-coding upstream 1941928 29175093 ~ 29175208 (+)
XLOC_012845 CR769777.2 non-coding upstream 2812819 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 3380296 27736724 ~ 27736840 (+)
XLOC_012870 NA non-coding downstream 792550 31999208 ~ 32002709 (+)

Expression


Co-expression Network