XLOC_012870


Basic Information

Item Value
gene id XLOC_012870
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31999208 ~ 32002709 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025680
tttttttacttaaaaaaatattacatttcaagtacttagttttaaaaatgtttttggctgatctttttcattttaaatgatttattgatgttcgggtcattgtatgtggcgatctattttttacagtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTGATAATCAAGATCTCAATTATAACCTCAAGTCTTGATGACAGCTTGATGATCTCCAAGAAGCACCACCATGTAAAGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTTCAATATTTCTTCTATAGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGACTCTGTCGATCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGCGGATTATTGTGGCAGAGATGGCCAAccactataaataataatataaaaagtactggtatgtatttgtattttttggcacATAAAGCATAAGGTTACCCAGTCCAAAGGAtactaatatattttaatgttgttgtgttcttcTTTTAAGATTCGGCATGTGGCCTAAATGAAGAGGGGTTAAAAGGTCTGTTGATCATCCTTCTCAGAAAGCAGCAAAATaactgagaaataaacaacaatacaatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagtgaacagacattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaataaattttcatcatctataaccaaa
>TCONS_00025681
tctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTGATAATCAAGATCTCAATTATAACCTCAAGTCTTGATGACAGCTTGATGATCTCCAAGAAGCACCACCATGTAAAGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGGCTGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGGTgaggaaattattattaatattacatgtagtcATGAAATATTGTAagtgttactattattgttattattttttttttcagtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATA
>TCONS_00025682
ggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTGATAATCAAGATCTCAATTATAACCTCAAGTCTTGATGACAGCTTGATGATCTCCAAGAAGCACCACCATGTAAAGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGGCTGTTGGTGAAATGGAGTGAGGCATACCAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTTCAATATTTCTTCTATAGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGGTgaggaaattattattaatattacatgtagtcATGAAATATTGTAagtgttactattattgttattattttttttttcagtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGACTCTGTCGATCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGCGGATTATTGTGGCAGAGATGGCCAAccactataaataataatataaaaagtactggtatgtatttgtattttttggcacATAAAGCATAAGGTTACCCAGTCCAAAGGAtactaatatattttaatgttgttgtgttcttcTTTTAAGATTCGGCATGTGGCCTAAATGAAGAGGGGTTAAAAGGTCTGTTGATCATCCTTCTCAGAAAGCAGCAAAATaactgagaaataaacaacaatacaatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagtgaacagacattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaataaattttcatcatctataaccaaa
>TCONS_00025683
tttttcaggttctttagattactttaaaaatccaatttagTTTTCTAATAAGCAAAAAGTAAAGTCACTTTACCAATGTCTATACGTTAAATTGCActtgtctctctctctatctctgttaacacctttgtatttgtttgattaattctGGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTGATAATCAAGATCTCAATTATAACCTCAAGTCTTGATGACAGCTTGATGATCTCCAAGAAGCACCACCATGTAAAGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTTCAATATTTCTTCTATAGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGACTCTGTCGATCCAGCAACAAAGAGGAGG
>TCONS_00025684
attctGGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTGATAATCAAGATCTCAATTATAACCTCAAGTCTTGATGACAGCTTGATGATCTCCAAGAAGCACCACCATGTAAAGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGGCTGTTGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGACTCTGTCGATCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGCGGATTATTGTGGCAGAGATGGCCAAccactataaataataatataaaaagtactggtatgtatttgtattttttggcacATAAAGCATAAGGTTACCCAGTCCAAAGGAtactaatatattttaatgttgttgtgttcttcTTTTAAGATTCGGCATGTGGCCTAAATGAAGAGGGGTTAAAAGGTCTGTTGATCATCCTTCTCAGAAAGCAGCAAAATaactgagaaataaacaacaatacaatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagtgaacagacattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaataaattttcatcatctataaccaaa
>TCONS_00025685
AGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCTATGATTTTAGTGTGTTTCATGCCTAAGCACATGAGTTTAAATCTGAGATAGATGAACTATATGATTATCTTAAACTGATCTACAGGTAAATGCCAAAACTTATTGGTTtacttatttgttgttgttttttttttgttgttttttttgtatatgttaaCCAGGTGAAATGGAGTGAGGCATACCAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTTCAATATTTCTTCTATAGGATTGGAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATTTCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACACAATCCATGGAACTGGCAGTGACCGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGAGGGCAGGTgaggaaattattattaatattacatgtagtcATGAAATATTGTAagtgttactattattgttattattttttttttcagtagcagacgcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000104522

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025680 False 1215 lncRNA 0.39 6 31999208 32002709
TCONS_00025681 False 606 lncRNA 0.42 5 31999334 32002084
TCONS_00025682 False 1207 lncRNA 0.39 6 31999353 32002709
TCONS_00025683 False 692 lncRNA 0.40 5 31999991 32002211
TCONS_00025684 False 1020 lncRNA 0.40 6 32000135 32002709
TCONS_00025685 True 631 lncRNA 0.36 2 32001370 32002084

Neighbor

gene id symbol gene type direction distance location
XLOC_012869 NA coding upstream 126532 31872021 ~ 31872676 (+)
XLOC_012868 BX908763.1 coding upstream 152652 31845504 ~ 31846556 (+)
XLOC_012867 dhx36 coding upstream 161448 31610744 ~ 31837760 (+)
XLOC_012866 NA coding upstream 477517 31519578 ~ 31521691 (+)
XLOC_012865 NA coding upstream 539721 31280850 ~ 31459487 (+)
XLOC_012871 BX908386.1 coding downstream 15392 32018101 ~ 32023119 (+)
XLOC_012872 NA coding downstream 37587 32040296 ~ 32041964 (+)
XLOC_012873 BX649622.2 coding downstream 82230 32084939 ~ 32088944 (+)
XLOC_012874 NA coding downstream 122582 32125291 ~ 32126339 (+)
XLOC_012875 NA coding downstream 177362 32180071 ~ 32363182 (+)
XLOC_012863 NA non-coding upstream 923589 31073243 ~ 31075619 (+)

Expression


Co-expression Network