XLOC_012871 (BX908386.1)


Basic Information

Item Value
gene id XLOC_012871
gene name BX908386.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32018101 ~ 32023119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025686
CTAATTCCATTAATTGTTGGAAAACTTATACCTCAGGATGAACCTGCTTGGGAACTCATTCTTCTCCTGAAAGACATTGTTGAACTTGTTGTGTGTCCTGTGCACACTAGCGAGTCTGTTGCATACTTGGAGAGCAAAATATCCGAACACCGCAATCGGTTCAAAGTACTTTTTCCAGAAAGAAAGCTTTTGCCAAAACATCACTTTCTGGAACATTATCCAGCGATGATCCATCTATTTGGTCCACCTGTTTCATTCTGGACAATGAGGTTTGAAGCCAAGCacagtttttttaaacaagtggctAGGCACACTAACTGTTTCAAAAATATCACCAAGACTTTGGCCAGGAAACATCAGCTCATGGTTGGTCAATTTATGCAGTCATCCCAGTGCGATGAATTACCTGTAGAGGTTACACGCATTTCAACTGTCCCTGTTGATATTCTCCAGGAAGACATTGCTTACACTTTTAACCAAAGATACCCGAACACTTCTGCTATTAATTTAGCTCAGACAGTATTTTCTGATGGCATAAAGTACACAAAGGGCATGATTATTGTGCATGGAACAATTAGTGGGCTGCCTGATTTTGCAGAAATAGTGCAGATTTGTGTTTTGAAAGATGGAATTGCTTTTATAGCAAAACAGTTAGGTTCTTGGTACAATGAGCACTATCGATCCTTTGAATTGGATATTCATCCAAGGAATGTTTCATTTATAGAGCTGAATGAATTAGCAGACCGTTATCCTCTCTGTGATTATAAAGTTGGTGCTATCCGTATGGTTACCTTGAAAAGATACATACACGCTGCTTGAccagttttctttttctcttacaGAGTGATTGATCAAACAGAGAAAATGACTGATCCAGCAAAGTTGAAAATTGTTCTAGGAGACAGTGATTCATTTAAATTGACGCTGCCATCTGGAATACCCAATTCTATTGCAGATTTTAAATCTGAGATCAGGAAACAATGTGGTGTCACAGGAGATTTTAGACTGCAGTATCTTGATATGGACTTTGATGATTTCTTAAATCTTACCTCAACAGTGGATCTCCAGGACAAAGGAACAGTTAAAGTCATAGCACAAAGTGCATATGATGCCTGTTCTCTTTCTTCTGCTGACACTGATATACGCTCCTCAACTTCCTCATCACCATCTTGCCTGCCAGTTTCTCCAGCAACATCAGATGTTGCTTCTGCCTCAACTTCTGAGCTGTCTTCGTCCACAAAGCTGAGATGTGAAACCTGGCCAACTAACTTTCCGATCCCTACGTTTCCTTATGAGATAGAGCTGGAACTGCAGAAAGCCCACGAAGAGTTCTTGAATGACGGTACTTTACTTGACATAGACTCAAAACCCAAACTAAAATCAGAAATTATGAAATCCTTGGCTGCAGAAGTAGTGAAATACAAAGTGTACCCTAGGACTGAAGAATACGAAGAGGTTGCGAAGGCGCTGATTACAAAGCATCCATGTCTACAGGAAAAAGGATCAGTTGGTGGGTTCTATGGCTGGAAGATCAGTCTACAGTGGAAGATGGCAAACTATCGGCGTACACTGCGAGCAGCTGGCTGTTCTGAAGTAAAGATAAattctttaaaacacaaacatgGTGAAACTACAAATCCAAACCAAGTCAAAAAGCCAAAGAAGGCTGAAGTAAATTTTTACCCTGATTATCCAGCTGGAGAGAACACACAAAGCCTAGAAGAAGAGCGACTGGCATTGCTGTCTGAGTTTCAGAAAAGGGACAAccatcaaattattaaaaacaaaatggaaaaaaCTTTTATCTACAGAAGACATGAATTGATTGTAGAGATGCCCTTCATTGTTGACTTCAAAAGCAGATGGCCAGCTCTGTTTTGTGAAAATGagATTGCTGCGGAATTCAGTCGAATCACTACTGTCCCGCTACTTCAGACATTTATGTCAAAACTGGATGGTTACACCAGCAAGCTGGCCAGCATCTACCGTAAAAAAGGAGGAATTGCAGGGCGTAAAATTTGGAAACTGATGGCTACTATCGACGAGAATGACACCATCTCAACTCGGAGGGCTTGTATTCTCAGAGCACTTTCTGTCTACCTTAATGAAGACTATGAAAACCTCATGAAGGAGTATACAgaCACAGACTTTGAAAACTCAGAGAGAGACATGGCCAATACTGTCATTGGAATCTACATCGTCAGACCTGAAGGTGCAGAAGCCTGTGACCCACCATCAGATGTTGGACTGATTGTTGAGGGAGTGAAAGTACTTCAGAACCTTGGCGATGTCACCAAGGCTTGTGCTCTTCTTTTGGGAGTCATATACAGCTTGAATCTCAGTTATCCTTCAGAATTGAAATACACTTTTGAGTTTTTCCAGAAAGTCTTGCTGGGACTTGATGCACATAAACTGTCACACAAAATACAAGTTCTCAAGAACAAACTTGTTGGCTGAATCAGTACATCAGTCTGGACAAATgaaagaaatggaggaagaagattttttttgtgttatttgatTTGTTTCTGCTTTTAAAATAAGGGGACAGTTTTAATGTTATCTTTGTTGATGGCGCCAAAATTTTAAATGAAGTTCTGCAACTTTAAATGGTTTAATTGTTTGGTTATTTACAAAGATTAGAGGTCAGTTTTAATCTTCTCTACCAATGGTTTAAACGATTTCAGTTATCAAAAATTGAGCACTGTAGCAGTTTATGACATGCTGCCTGtcttaaacttttattttctttttctaagTAAAATTTATTACACTTTGAAGGCAgttgcacattttaaaataacattttggtCAATGGTAATCTAGTTAGTAAAGTAgtagtcattgttttttttttgttttgttttttgtcattttgaaacAAACTTATTTTTGTGGTGGTTTTCATAAATAGAGGCCAGTTGTACTCTTTATCAAtagcttaaacattttaaaatataagcaaTTGAGCACTGTAGCATTTCGTGATAGGCTAcctgtttaaattattattacaaattttcttttgtaaatttgATCCTATACATTTTTCTTACAATATTTGAAGGAAGTAGCACATTATAAGAATGATCACCATTgaccaaaatgttgtttttacatgttttttcttTAAACTGTTATTTGAACTGTTTGTGGatgtttacaaaaattaaaacagttttaatgTTACTATTGATTGTAAAGATCAAAAATGGAGTTTAGCAGTATTTTAACGTTCCTTTGATTTAATTTTTCTAAGTAAGATTATTTCAAATTCATGAAGCTAGTTGCACTTTAAAAGACCTTGTAAAGAATGTTTACTGTTAAGAATGTaaaatatttgatgtttttgtgtatttgtttcaAAGGACCTGTGAAATTGAAATTGTTTATGGGTTTTAGCAGTTGTATGTTGCAAAatcttgaaataataaataaattcattttgtt
>TCONS_00026912
caatgaatatatttttaaacatgaaaGATATCCTTACTATAATCTTGTGTCCTAAATCTACAGATTGCTGCGGAATTCAGTCGAATCACTACTGTCCCGCTACTTCAGACATTTATGTCAAAACTGGATGGTTACACCAGCAAGCTGGCCAGCATCTACCGTAAAAAAGGAGGAATTGCAGGGCGTAAAATTTGGAAACTGATGGCTACTATCGACGAGGTTTGTTATATGTATTTAAGATGCTTGTAAATAATTTTCACTTTAGTATGGTGTTTTTTCATTGTTTATCCATAATGTCTCTCTTCTACAGAATGACACCATCTCAACTCGGAGGGCTTGTATTCTCAGAGCACTTTCTGTCTACCTTAATGAAGACTATGAAAACCTCATGAAGGAGTATACAgaCACAGACTTTGAAAACTCAGAGAGAGACATGGCCAATACTGTCATTGGAATCTACATCGTCAGACCTGAAGGTGCAGAAGCCTGTGACCCACCATCAGATGTTGGACTGATTGTTGAGGGAGTGAAAGTACTTCAGAACCTTGGCGATGTCACCAAGGCTTGTGCTCTTCTTTTGGGAGTCATATACAGCTTGAATCTCAGTTATCCTTCAGAATTGAAATACACTTTTGAGTTTTTCCAGAAAGTCTTGCTGGGACTTGATGCACATAAACTGTCACACAAAATACAAGTTCTCAAGAACAAACTTGTTGGCTGAATCAGTACATCAGTCTGGACAAATgaaagaaatggaggaagaagattttttttgtgttatttgatTTGTTTCTGCTTTTAAAATAAGGGGACAGTTTTAATGTTATCTTTGTTGATGGCGCCAAAATTTTAAATGAAGTTCTGCAACTTTAAATGGTTTAATTGTTTGGTTATTTACAAAGATTAGAGGTCAGTTTTAATCTTCTCTACCAATGGTTTAAACGATTTCAGTTATCAAAAATTGAGCACTGTAGCAGTTTATGACATGCTGCCTGtcttaaacttttattttctttttctaagTAAAATTTATTACACTTTGAAGGCAgttgcacattttaaaataacattttggtCAATGGTAATCTAGTTAGTAAAGTAgtagtcattgttttttttttgttttgttttttgtcattttgaaacAAACTTATTTTTGTGGTGGTTTTCATAAATAGAGGCCAGTTGTACTCTTTATCAAtagcttaaacattttaaaatataagcaaTTGAGCACTGTAGCATTTCGTGATAGGCTAcctgtttaaattattattacaaattttcttttgtaaatttgATCCTATACATTTTTCTTACAATATTTGAAGGAAGTAGCACATTATAAGAATGATCACCATTgaccaaaatgttgtttttacatgttttttcttTAAACTGTTATTTGAACTGTTTGTGGatgtttacaaaaattaaaacagttttaatgTTACTATTGATTGTAAAGATCAAAAATGGAGTTTAGCAGTATTTTAACGTTCCTTTGATTTAATTTTTCTAAGTAAGATTATTTCAAATTCATGAAGCTAGTTGCACTTTAAAAGACCTTGTAAAGAATGTTTACTGTTAAGAATGTaaaatatttgatgtttttgtgtatttgtttcaAAGGACCTGTGAAATTGAAATTGTTTATGGGTTTTAGCAGTTGTATGTTGC
>TCONS_00027123
tttaaagtaccGCCACATAAATTCATGAATATATGTTGTCAATCACTGTCGCATCTGTTGAGCACAAGAACACTGGCCAATgaCACAGACTTTGAAAACTCAGAGAGAGACATGGCCAATACTGTCATTGGAATCTACATCGTCAGACCTGAAGGTGCAGAAGCCTGTGACCCACCATCAGATGTTGGACTGATTGTTGAGGGAGTGAAAGTACTTCAGAACCTTGGCGATGTCACCAAGGCTTGTGCTCTTCTTTTGGGAGTCATATACAGCTTGAATCTCAGTTATCCTTCAGAATTGAAATACACTTTTGAGTTTTTCCAGAAAGTCTTGCTGGGACTTGATGCACATAAACTGTCACACAAAATACAAGTTCTCAAGAACAAACTTGTTGGCTGAATCAGTACATCAGTCTGGACAAATgaaagaaatggaggaagaagattttttttgtgttatttgatTTGTTTCTGCTTTTAAAATAAGGGGACAGTTTTAATGTTATCTTTGTTGATGGCGCCAAAATTTTAAATGAAGTTCTGCAACTTTAAATGGTTTAATTGTTTGGTTATTTACAAAGATTAGAGGTCAGTTTTAATCTTCTCTACCAATGGTTTAAACGATTTCAGTTATCAAAAATTGAGCACTGTAGCAGTTTATGACATGCTGCCTGtcttaaacttttattttctttttctaagTAAAATTTATTACACTTTGAAGGCAgttgcacattttaaaataacattttggtCAATGGTAATCTAGTTAGTAAAGTAgtagtcattgttttttttttgttttgttttttgtcattttgaaacAAACTTATTTTTGTGGTGGTTTTCATAAATAGAGGCCAGTTGTACTCTTTATCAAtagcttaaacattttaaaatataagcaaTTGAGCACTGTAGCATTTCGTGATAGGCTAcctgtttaaattattattacaaattttcttttgtaaatttgATCCTATACATTTTTCTTACAATATTTGAAGGAAGTAGCACATTATAAGAATGATCACCATTgaccaaaatgttgtttttacatgttttttcttTAAACTGTTATTTGAACTGTTTGTGGatgtttacaaaaattaaaacagttttaatgTTACTATTGATTGTAAAGATCAAAAATGGAGTTTAGCAGTATTTTAACGTTCCTTTGATTTAATTTTTCTAAGTAAGATTATTTCAAATTCATGAAGCTAGTTGCACTTTAAAAGACCTTGTAAAGAATGTTTACTGTTAAGAATGTaaaatatttgatgtttttgtgtatttgtttcaAAGGACCTGTGAAATTGAAATTGTTTATGGGTTTTAGCAGTTGTATGTTGCAAAatcttgaaataataaataaattcattttgtt

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098316

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025686 False 3450 lncRNA 0.37 4 32018101 32023119
TCONS_00026912 False 1680 lncRNA 0.33 2 32020096 32023085
TCONS_00027123 True 1392 lncRNA 0.31 3 32020523 32023119

Neighbor

gene id symbol gene type direction distance location
XLOC_012870 NA coding upstream 15392 31999208 ~ 32002709 (+)
XLOC_012869 NA coding upstream 145425 31872021 ~ 31872676 (+)
XLOC_012868 BX908763.1 coding upstream 171545 31845504 ~ 31846556 (+)
XLOC_012867 dhx36 coding upstream 180341 31610744 ~ 31837760 (+)
XLOC_012866 NA coding upstream 496410 31519578 ~ 31521691 (+)
XLOC_012872 NA coding downstream 17177 32040296 ~ 32041964 (+)
XLOC_012873 BX649622.2 coding downstream 61820 32084939 ~ 32088944 (+)
XLOC_012874 NA coding downstream 102172 32125291 ~ 32126339 (+)
XLOC_012875 NA coding downstream 156952 32180071 ~ 32363182 (+)
XLOC_012876 olfcg12 coding downstream 421517 32444636 ~ 32449308 (+)
XLOC_012865 NA non-coding upstream 558614 31280850 ~ 31459487 (+)
XLOC_012877 BX908401.1 non-coding downstream 432927 32456046 ~ 32457443 (+)

Expression


Co-expression Network