XLOC_012877 (BX908401.1)


Basic Information

Item Value
gene id XLOC_012877
gene name BX908401.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32456046 ~ 32457443 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025689
cactgttgtatttacagaagttgtatgagaataagctacaggttgattttatactaatctgttatttttcttttttagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactgATaaagtgaggacaaatgtccataccacaccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatatatatatatatatatatatatatatatatatgtgtgtatatgtgtgtgtgtgtgtgtgtgtatatatgtatggtatgtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttcaaaataagtttgactttatacttctgcaattatatataatatatattttttattttttatttttttttttgtttgtttattattattttaatgttttattaaaaaatgtttcaagatgtttcttcagaattctgcagtacttttcacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttaggtttatataaaatttagctgtttttttacaaatttttaattcaagtctattgggaaaacagggttgttttaaaaacatctgtgtttgtgtgtaatttttatattttttgtttaaatctttctgtgtgtctttattgtgttgttttattgttgtttttatattgatattcttgtgcacaacaaattatttataaaattttagtactatttctttcttgcaatcaataaacgtttaacattta

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048785 hatching gland development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0007167 enzyme linked receptor protein signaling pathway biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099876

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025689 True 1227 lncRNA 0.27 2 32456046 32457443

Neighbor

gene id symbol gene type direction distance location
XLOC_012876 olfcg12 coding upstream 6738 32444636 ~ 32449308 (+)
XLOC_012875 NA coding upstream 92864 32180071 ~ 32363182 (+)
XLOC_012874 NA coding upstream 329707 32125291 ~ 32126339 (+)
XLOC_012873 BX649622.2 coding upstream 367102 32084939 ~ 32088944 (+)
XLOC_012872 NA coding upstream 414082 32040296 ~ 32041964 (+)
XLOC_012878 NA coding downstream 79141 32536584 ~ 32537445 (+)
XLOC_012879 olfcg1 coding downstream 106111 32563554 ~ 32567412 (+)
XLOC_012880 CABZ01012885.1 coding downstream 157632 32615075 ~ 32621477 (+)
XLOC_012881 olfcg7 coding downstream 323007 32780450 ~ 32784279 (+)
XLOC_012882 olfcg6 coding downstream 344160 32801603 ~ 32804805 (+)
XLOC_012871 BX908386.1 non-coding upstream 432927 32018101 ~ 32023119 (+)
XLOC_012884 NA non-coding downstream 439133 32896576 ~ 32897362 (+)
XLOC_012885 NA non-coding downstream 449046 32906489 ~ 32912601 (+)
XLOC_012896 NA non-coding downstream 708170 33165613 ~ 33168091 (+)
XLOC_012909 BX649633.1 non-coding downstream 985821 33443264 ~ 33444257 (+)

Expression


Co-expression Network