XLOC_012885


Basic Information

Item Value
gene id XLOC_012885
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32906489 ~ 32912601 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027127
TGTCCAAGATCCAAAGCCATCAGCAGATCAAAGAAAAATGCAGAgtaagtgtaaaaaataaataaactatatacaTTTTATGTAGTGTCATAGTAGCAAATGCAACTTACCAACTTGACCTTTCTCAGCACCAGTTTTTCCAATAAGCATGTCCCATGTAAATGAGCAAGAAAATGCTTGGGGGGACCACCCATCGAGCTATCGAGGTGCAACaacattcaataaaaaatacacagcaaattagtttttaattattaacatggTAATGTTACATTGTCTGTACAATCACACAGAAGACACAACTTCTGAGCTGAGACCCTCAAGTACCCAGGCAAGAGCGAAGAGtaagtaatttgttttttttttaattgacagttACTTCTTatgaattatcattattattattatgttttttatacagtattcgtagttgtatttatatactgctaaccaacatctattaatgtagttAAATCTtaacaaatgaattaaatttcTTACAAATTAATTAACAATTTGCTAATGCTAAATGCTTGATTCAGTGTGAGTCAAACTTTCTTCCTTCTTGccgaacacaaataaagatattttgaagaaagttggaaaccagtaaccattgacttccatagcatttgttttttctactatagaaTTCAATGGTCACcggctttcagctttcttcacaataccttccttgtgtttagcagaagaaaaaaaacttcaaatgtttataaccacttaaTGGTCTGTAAAACGTAAGTAAATTTACATccctttaatttatttgtaaacataTTAATCAACACTGAATATGAAACTTGTTCAAAGCAACTAATCAATGACATTTTCCAATTTTCTGTGAAAATTTTACATGGTTAATAAGCTGTTcgcaaaacatcaaattatttcCTTGTAACCTAATAAATCAATAACACTTTAGTTAATTATAGTGACAGTAAAAAAACTCACTGTATTCAGAATATTAATGTATTAGAGTACAATATATAATTTATCATTACCTATAAATTAATAGTTTGAAAATTATTTTGAAGTGTTTTGTTCATTTATGCTTTCAATAACTTTGGGGAACTAACAATTTTGTATGCACagaaaaattaatataaaaactattatacGTAAAAGCACAGACCAAGAGGGGGTTGGCTTCTGTCtgattttttaaattcagttttatttccCCTTAATTAGGTTTTGCAATTTTGCTTTTGAATTCTGTGAATAGTTTAAGTCATTTTAATCATAGAAAAACAATGAGTATTCAGaaggatatatatttttttattgtttaaggtTTCAAGCATATTATTATAATATCCTcataacatttttgtgaatcgtttaaaaatgattttgcttGCAGATGCTTCTGGTATCAGCTGATGGAGCTGCATCTCCAGTCAATACACACGTGAGTGAAATTTAAgtgctaaaaaataataataataatttaaaaatatttacatatagttGAATAGAGATTAACCCACTtactgtgttgcagctgtggAGAGGGTAATTTTGGAGAAGCTTAATGAGCTGGACGTGAAGATTACCCATCTAACTTCAGTGGTCCAGTCCCTTGCCCCTCGGTAAAGTGGTCAAATGGAGGTGGACACTGAGGATGACACCTTTCCTATTGAAACAATGGAGGACCTTGAACAACTGAAAAGGCAATTAGCTGAAAAACCAATGATGGAGAAGATGGTACGaatatttaagatttaaaggtTTTACAGCTGTTGTTAAGTAAATCTTTATTATATGGCCAGTTTCACAGACAACACTTAAGGCTAGTCCCaaactaaaaatgtatgtgtgagCTGTGTGATGCCTTACAATATCTCATTGCCATTATTTTGTTACCAGATCCAGGCTAGTATCGTGCTTATATTTTCTTTCACATGCATTTTTATAAAAGAAGTTTTATATCTAACATTAACCAAGACTTAAGCTCATCCTTGTCTGTAAAACTGGGCCATAGTCCTTGCACTTTATCTGTAAAGATTTaatattaccttttatttttaagatgaaGAGGTTATCCATCAGAGGAGGAcaaactctaaaaaaaaacatttggcgTGTATGCTCCAAAGTGTTTGGTCCAGTGGCCAAACAGCTCAACTGGTGTGGAAGAGGAGATAAAAGAGgcctaaaaaacacaaatattgggACACTTGTGATAGGTATGTTCAATTGTCTTGCAATTTAGACAATCCCTTTAAAGACAGAACTGCCAGTATATCTCTATAGCATGATTACCTTGTACACACATAATATAGTTATCAGTGTGCTATAAGCTTACGAGCTAGCATATGCTGTTCGTATATTGTACTATGATATTTAATACACAAGagtgttttagaaataaaatttagATCATTATTTTAAGTGGAGAATTGTTCATTCTTGTATATTAGGGTGAGGAGATTAAACCTTAAATCAAAACCTTGATTGATTGAACACTTTACCTACTTTTGAAATATTgaatcattatatatatttttttccaagtaTTTTTTGCTACTTAATCAagttccatttattcatttactaaacattttagttttagtgttAAAAGAAAGTTTCCTTAAAGAAATATTTCCATGTCAAAAGTGGAAAATGACTCGTATCTTTAACAAGCATAACTTGTGTCtggaaaatagtaaataataaagcaATGTGAAAAAGTACATAATGTGAACATTGCTGttcacaataatattttaagtgcGTATGTGTGCATGCTTTTCTTTACGAAAAGACAGCTtacattgtttgttcattcattcattttctttttggctcagtccctttattattctggggtcgccacagctgaatgaaccgccaacttatccagcattcgttttacgcagtggatgccattccagttgcaacccatcactgggatacacacacacacacacacacacacacacacacacacacacacacacacacacacactcatacactatggaccatttttttaacttacccaattcacctattgaccttattcttcgcaAACGAGTGggtgctgccatttgaatctttttggcacgagacttccggtctcattcacttccattcatttttatacattaaaaactgctcgtttcgctgtttgatgttgcaaactgatatttccttgttatattattctacttggtctgtatagtcatgcaaacatttgtttgtagagcaagtagtttgaccgttttttgccgtttataattccttgtcatttcttccataggcgactgaaacggaagttctaagacaatcgcaaaaacaggcgcacttgcgcattttagaataaggtcaatacctcgtctttggacttgtgggggaaatcggagcacccgtagaaaacccaagcgaacacgggaagaaaatgtaaactccacacagaaatgccatctgacccagccgaggctcgaaccagcgaccttcttgctgtgaggcgatagtgctgaTTACTGCACCTACGTTGTATGTGATAACtagaaatcataaaaaaaaaaatctcagtcgATTTGATTATTAATATAGGTTAAAGAAAAGTGAGTTATGCTTCACACATTATAGGTCatataataatgaaaaagaaaatctgtCATGCCTCTgaacattaaagggtcacgaaacaccaaaacacattttttaagctgTTTACAGTCGTATATgagtcccacactgctaaaaacactattaggacacctatatttcactaaaaagtgtaaattggttgtttttgcgttatttcaagcaaattcgtacttcctgtttgaaacgaatttttgaagctgcgtcacggtcatgacataatagcgtgtattccagcgtgcagactgggcgtctgtgccagagtgagtcttattacgtcttacagtgtgatgcattaatgcatgagtaaggcttggttcaaaccaattagcacgctctattgtgcaacttcattaatattcattagtgtcaccgtgtttacgccacagagacgccacgttgtgttggcaaaacaagcgtgaagtgttgcttttatagtttgctgccattaagtttcgttttcattttctctttgtgagagctcagctggatcacgtgtggattaacagtgcacgcgacgctcgacaacaataacttacgtgtctaaggaggaacgttgtttacctgagagctgttctcatctgcaaacgctgaaatccggattcgcttgtaacgttagtctcctcttcataaagacgcggctctagttgctggtgattgtcctgtctctacagatttggtaagtgagcgaccagggctctttgtttattcagtttgttcgtattgaattaagttaactattgcactgagtgcaaacatagcaccgcattttgtgaccggaataacacacgcggctttctgacgctacctgccgtgtgcatctaagtttctgggaaatgcggagggttttttttctctcattcgccgtgcggtatcaaacattgcatgaaaaatacacgcttagagcagatcctcgaatcaaatatcgtgtttgtcgcgaggggcatgaatgaattccctgaatgaaagagccaaactgcagttaaagtccaccatttaataatttggcaaataattcgactacagatgtcaatgtaggttaaacaccatcactttctcatgtgtgtgtattttgactgaaactcgcgcgtgcccaaatagacactcccacaccatcccactttagttcctccgacactcccccctaaacagagctggacacgcccacttttcggactttttccaaagtagaggtgtgaaaacaccctgctgaaacgagggggtttcatggccctttaatcatATTGCCTGCATTCGCTTGAGCTTTGCTGAAGTACATGTGGATGGTACATAACTTGAATTTAAATCGCCACGTGGGGATATATGTCGGTTATGGGTTTAggttttgattttgattaatcTCCCAGCACTACTGTATAATGCATATGTACACttttacagtattcattattttgcagTCAATTTGTCGTATGATATTAATCTAATAAATTTAAGGAACAGATTTTCCGAAATTTAAGTTAGCCCTAATCCACTTAAACTGCTGCTTGGTCAGTTGTCATCACAACGTGTTTAAACATAGCTTTATTCGTCTAAAAAAGTTATTACCTTGTTAAATTTACTACAAACAAAATGGAATAAGTATTTTACTGACCGCACATATCAATAACAATGAATCAGACTGCTTACCTCAGTATTCCCACGTGGACTGGTGTCTTCTATGTGCTGAGTGTGATGCTTTGGGGAAACATGCGCAATAGTGATGAAGTTTCGAACACAAAAGAGTCGATTCCTTGAATTTGACCACTTGTCCAAGTGCATACTAATGCAAGTACacttgtgtttgttgttgttattttttctttattcattttatgGCGGATTTAAGCTTTTGCACCTCTCGTTTCTCTTTGACATCAAATCTTTAAAGCTATAGCTTAATTTATTTGAGAgtaacattttaaagaatattataTTGATTACATGAGGACGGTGCATGATCGAATAGCAATGAGTAAAAATATTTGCAATCTAAGCCgtatttcaaaaacaaatgaacagCAATCAAACAAAGGTAGgctaaactgatttaaaaaatggTGTTAACGATTATCAAAAATAGACTATATACAATTTAGCTAAACGAATTTCAAACAATCATAGTATTATTTCTtccactctattattattattattattattattattattattatgtagtcaAATGCAATAATTAACATGGTGTGTATTAATTTTGGtcagataaaaaataaaaggctcacaataaataaaacaccccttGAGCCTCCTTAAAACCgccttattttaatttcttttttttttcttctttttcaacaGGTGCAGCTATGAGGAACCCCGTGCTTCCGTCTCCAACAGAGGCAGAAGCCGAAAAATATTTGAAAGACTTTCTCCGCTTGGCCCCAGGAAGAATGGCCTCTTAAGCGagttgctattttttatt
>TCONS_00025695
CCAGTTTTTCCAATAAGCATGTCCCATGTAAATGAGCAAGAAAATGCTTGGGGGGACCACCCATCGAGCTATCGAGAAGACACAACTTCTGAGCTGAGACCCTCAAGTACCCAGGCAAGAGCGAAGAATGCTTCTGGTATCAGCTGATGGAGCTGCATCTCCAGTCAATACACACctgtggAGAGGGTAATTTTGGAGAAGCTTAATGAGCTGGACGTGAAGATTACCCATCTAACTTCAGTGGTCCAGTCCCTTGCCCCTCGGTAAAGTGGTCAAATGGAGGTGGACACTGAGGATGACACCTTTCCTATTGAAACAATGGAGGACCTTGAACAACTGAAAAGGCAATTAGCTGAAAAACCAATGATGGAGAAGATGatgaaGAGGTTATCCATCAGAGGAGGAcaaactctaaaaaaaaacatttggcgTGTATGCTCCAAAGTGTTTGGTCCAGTGGCCAAACAGCTCAACTGGTGTGGAAGAGGAGATAAAAGAGgcctaaaaaacacaaatattgggACACTTGTGATAGGTGCAGCTATGAGGAACCCCGTGCTTCCGTCTCCAACAGAGGCAGAAGCCGAAAAATATTTGAAAGACTTTCTCCGCTTGGCCCCAGGAAGAATGGCCTCTTAAGCGagttgctattttttatttatttttttgctgcaaTTGGTTTTGTTTGCTTCAAAAAAT

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0022402 cell cycle process biological_process
GO:0022616 DNA strand elongation biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0007017 microtubule-based process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0033554 cellular response to stress biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0000725 recombinational repair biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006270 DNA replication initiation biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0043596 nuclear replication fork cellular_component
GO:0061695 transferase complex, transferring phosphorus-containing groups cellular_component
GO:0043601 nuclear replisome cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005657 replication fork cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0030894 replisome cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function
GO:0034061 DNA polymerase activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100356

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027127 False 6073 lncRNA 0.35 1 32906489 32912561
TCONS_00025695 True 699 lncRNA 0.44 6 32906619 32912601

Neighbor

gene id symbol gene type direction distance location
XLOC_012884 NA coding upstream 9127 32896576 ~ 32897362 (+)
XLOC_012883 olfcg1 coding upstream 58745 32844439 ~ 32847744 (+)
XLOC_012882 olfcg6 coding upstream 101684 32801603 ~ 32804805 (+)
XLOC_012881 olfcg7 coding upstream 122210 32780450 ~ 32784279 (+)
XLOC_012880 CABZ01012885.1 coding upstream 285012 32615075 ~ 32621477 (+)
XLOC_012886 olfcg2 coding downstream 3750 32916351 ~ 32923910 (+)
XLOC_012887 olfcg3 coding downstream 37879 32950480 ~ 32955791 (+)
XLOC_012888 olfcg4 coding downstream 66565 32979166 ~ 32982171 (+)
XLOC_012889 olfcg5 coding downstream 80045 32992646 ~ 32995792 (+)
XLOC_012890 olfch1 coding downstream 84236 32996837 ~ 33000125 (+)
XLOC_012878 NA non-coding upstream 369044 32536584 ~ 32537445 (+)
XLOC_012877 BX908401.1 non-coding upstream 449046 32456046 ~ 32457443 (+)
XLOC_012875 NA non-coding upstream 543307 32180071 ~ 32363182 (+)
XLOC_012874 NA non-coding upstream 780150 32125291 ~ 32126339 (+)
XLOC_012896 NA non-coding downstream 253012 33165613 ~ 33168091 (+)
XLOC_012909 BX649633.1 non-coding downstream 530663 33443264 ~ 33444257 (+)
XLOC_012918 CR405715.1 non-coding downstream 710316 33622917 ~ 33626850 (+)
XLOC_012922 NA non-coding downstream 812975 33725576 ~ 33731615 (+)
XLOC_012923 CU463109.2 non-coding downstream 822734 33735335 ~ 33747115 (+)

Expression


Co-expression Network