XLOC_012922


Basic Information

Item Value
gene id XLOC_012922
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33725576 ~ 33731615 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026915
TCTGAGAAAGAAGTTCAGAGTGCACATCAATCAAGTTCGTCTGTAATGGATCTATCGTTGACAAACGGAGAGTACGATTGTAGTCCCAAAGACCAAGCTGCGGATCTAAAGGCTCATTACAGGTGCCAGCACAATGTTCATGTTCGATCAGGCATGGCTTGTCAACAACGGCTGTCCAAAAACGTGCTGTGGGGCAAAAATGGTTTGCACTTTGGTAAAGACTGTAGACAAAAGGGGAGGAACAAGTATgaaCAATGAACCCCATATTCCCACTTACTCAACCTCTGTGCGCTTGTTGTAGGGGTCACTGTAGTTGCCACCACCGCAAGAGTTAACTCTGTTGAGATGCCACCATGTCAGAGCCTGAGCTGCCAGTTGCCACCAGAGCTATTGAAGCCAGATTCATAAGAGTTACTGTCAACAGAACCGCTCACAAAGCCTCAACCACATTCAGACCCATTCCAGCAAAACTGCCAGAGCCTGTGGTGCTAGAGCTGGCAGATCTGCTGCTGCCATAGCCAACGCTTCCAGAGCCACCGATGCCACCACCTGAGCTCCAAGATTGGCCACCTCTGCTAGAACCAACTAACCTATAAGAGCCACTCTACCTATTTCTAAAGTGA
>TCONS_00025752
TCTGAGAAAGAAGTTCAGAGTGCACATCAATCAAGTTCGTCTGTAATGGATCTATCGTTGACAAACGGAGAGTACGATTGTAGTCCCAAAGACCAAGCTGCGGATCTAAAGGCTCATTACAGGTGCCAGCACAATGTTCATGTTCGATCAGGCATGGCTTGTCAACAACGGCTGTCCAAAAACGTGCTGTGGGGCAAAAATGGTTTGCACTTTGGTAAAGACTGTAGACAAAAGGGGAGGAACAAGTATgaaCAATGAACCCCATATTCCCACTTACTCAACCTCTGTGCGCTTGTACAATGTGCATTGAGGCACAAGGTTGTAGGGGTCACTGTAGTTGCCACCACCGCAAGAGTTAACTCTGTTGAGATGCCACCATGTCAGAGCCTGAGCTGCCAGTTGCCACCAGAGCTATTGAAGCCAGATTCATAAGAGTTACTGTCAACAGAACCGCTCACAAAGCCTCAACCACATTCAGACCCATTCCAGCAAAACTGCCAGAGCCTGTGGTGCTAGAGCTGGCAGATCTGCTGCTGCCATAGCCAACGCTTCCAGAGCCACCGATGCCACCACCTGAGCTCCAAGATTGGCCACCTCTGCTAGAACCAACTAACCTATAAGAGCCACTCTACCTATTTCTAAAGTGAGGacaatttatgctttataaatctctaATAAaagacaattaaaggctcagtgtCAAATGAACAGTACATCTTTGTAAtcctatctaaaaataaaattactgtaaagtttaaaaacATTGCCGAATatcaggagtgtcaaaatacgacataaaattggataaaaaaacaacaacaatataataatttaacaacatattatgatacaaaattataatgttatttagCTAAGTTTAAACTGTACGGTAActttattttagttaagattgcaaaaatgtatttttcatttgatgcagATTCATTTATGTATCTTCAAATGATAAGAAAAAAATCAAGTTGTGTTTTTTCCCCCTGTTTAGAagataactgagcctttaattgttatttataagggatttataaagcataaatagtcctcactttagattaggtcacaaaactggatgaagttaaaatactaaagcatttattaacatacaaattaattgttagtatatgcctgaataataagatatataaatgttaatttgaatggtttattatttacttatgcgTTCTAAATGATCTTTAAAAGCCACAAAGTACTCTCAAATAATTGGTTTGTAAATGATACAATACTTAAGtattgaaaaaattattattaataaagtatgaaaatacaatcattaagcacattatagacGTGCTTATaaatcaagaatagagcatttgtatctgtagttacaaactgcttactaacttctgttaatgtagagttaatgcttaacaaatgatgaattaaatttgctaatgcttaataaattattagtgtgtagttattataaagtgttaccaaaatgggtattgtttatttattttttatgggaGGGCTCTAACAATGAATATTATTGCTGTCCAACTGATTATTCTCATTTTCTGGTCATTAAAGGTAAAACAATAGGTACTGTGCGAGGAATCATATTATGAACAATTTTAACTTGTTTTCAGCATTAAATGAAAGCCTTATTTGAAAGGCCTGCAGAACATATGTTGGTCTCATTTGCAGTTATTAAACGTTCAAACTCTGTATAGAAACAGGTATAGTTCAATGTACTTGTGCTTCAGTTGATTTTCATCTGATATGCAGATTATgtgcagtgttgggtaagttactctGAAAACGTAATTCATTATTGATTATtactaattataatttaaaaataaatacaattgtattttaaataacttttttattcaatttaattaaaaacttaattactCAGTAAATCATTTACTACTCAATATTATAAAAGAAATATCCACAAATCCCAAAGCATagacaatagaaataaaaaaaataattctttaaatttgaGTCTAACAGGACCTTTTAGTTTcattaaacattatatatttcaaatatttttaaatttgataCCATATTTCATACAGACCAATAAGCATGTGTAATTGTTGGACAAATGTAACattctttaataataaaaaaatgggttattttacaaaatatctgaATTTTGACAACAAAATTTTCTGAATTAATACAAGATATTGTCAGAATAAATCTTtcaatttaactattttatacTAGACAGCGAAAGATAAAGAGGTTATATTTGCATGCAGGGGCTgtgtaaaatttataataataaaaaatgtttttttaaataaatattatgtttgtgtgttttttgctgGTTTTTGTACTTGAGTAAATTTTTCTCATTGT

Function

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0045165 cell fate commitment biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026915 False 623 lncRNA 0.48 5 33725576 33729892
TCONS_00025752 True 2370 mRNA 0.31 4 33725576 33731615

Neighbor

gene id symbol gene type direction distance location
XLOC_012921 olfcq18 coding upstream 36302 33685119 ~ 33689274 (+)
XLOC_012920 olfcq17 coding upstream 46322 33675664 ~ 33679254 (+)
XLOC_012919 olfcq16 coding upstream 69151 33652976 ~ 33656425 (+)
XLOC_012918 CR405715.1 coding upstream 98726 33622917 ~ 33626850 (+)
XLOC_012917 olfcq15 coding upstream 126376 33591704 ~ 33599200 (+)
XLOC_012923 CU463109.2 coding downstream 3720 33735335 ~ 33747115 (+)
XLOC_012924 si:dkey-145c18.4 coding downstream 30475 33762090 ~ 33766913 (+)
XLOC_012925 si:dkey-145c18.3 coding downstream 47825 33779440 ~ 33796526 (+)
XLOC_012926 olfcq19 coding downstream 86962 33818577 ~ 33821891 (+)
XLOC_012927 olfcq20 coding downstream 182553 33914168 ~ 33918356 (+)
XLOC_012909 BX649633.1 non-coding upstream 281319 33443264 ~ 33444257 (+)
XLOC_012896 NA non-coding upstream 557485 33165613 ~ 33168091 (+)
XLOC_012885 NA non-coding upstream 812975 32906489 ~ 32912601 (+)
XLOC_012884 NA non-coding upstream 828214 32896576 ~ 32897362 (+)
XLOC_012928 NA non-coding downstream 296657 34028272 ~ 34048667 (+)
XLOC_012935 NA non-coding downstream 1211113 34942728 ~ 35038409 (+)
XLOC_012936 AL935279.1 non-coding downstream 1341361 35072976 ~ 35074637 (+)
XLOC_012937 NA non-coding downstream 1343800 35075415 ~ 35075774 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000080_05119672_05121617 NA coding CI01000080 null 5119056 ~ 5121754 (-)