RNA id: TCONS_00027123


Basic Information

Item Value
RNA id TCONS_00027123
length 1392
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id XLOC_012871
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32018101 ~ 32023119 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaaagtaccGCCACATAAATTCATGAATATATGTTGTCAATCACTGTCGCATCTGTTGAGCACAAGAACACTGGCCAATgaCACAGACTTTGAAAACTCAGAGAGAGACATGGCCAATACTGTCATTGGAATCTACATCGTCAGACCTGAAGGTGCAGAAGCCTGTGACCCACCATCAGATGTTGGACTGATTGTTGAGGGAGTGAAAGTACTTCAGAACCTTGGCGATGTCACCAAGGCTTGTGCTCTTCTTTTGGGAGTCATATACAGCTTGAATCTCAGTTATCCTTCAGAATTGAAATACACTTTTGAGTTTTTCCAGAAAGTCTTGCTGGGACTTGATGCACATAAACTGTCACACAAAATACAAGTTCTCAAGAACAAACTTGTTGGCTGAATCAGTACATCAGTCTGGACAAATgaaagaaatggaggaagaagattttttttgtgttatttgatTTGTTTCTGCTTTTAAAATAAGGGGACAGTTTTAATGTTATCTTTGTTGATGGCGCCAAAATTTTAAATGAAGTTCTGCAACTTTAAATGGTTTAATTGTTTGGTTATTTACAAAGATTAGAGGTCAGTTTTAATCTTCTCTACCAATGGTTTAAACGATTTCAGTTATCAAAAATTGAGCACTGTAGCAGTTTATGACATGCTGCCTGtcttaaacttttattttctttttctaagTAAAATTTATTACACTTTGAAGGCAgttgcacattttaaaataacattttggtCAATGGTAATCTAGTTAGTAAAGTAgtagtcattgttttttttttgttttgttttttgtcattttgaaacAAACTTATTTTTGTGGTGGTTTTCATAAATAGAGGCCAGTTGTACTCTTTATCAAtagcttaaacattttaaaatataagcaaTTGAGCACTGTAGCATTTCGTGATAGGCTAcctgtttaaattattattacaaattttcttttgtaaatttgATCCTATACATTTTTCTTACAATATTTGAAGGAAGTAGCACATTATAAGAATGATCACCATTgaccaaaatgttgtttttacatgttttttcttTAAACTGTTATTTGAACTGTTTGTGGatgtttacaaaaattaaaacagttttaatgTTACTATTGATTGTAAAGATCAAAAATGGAGTTTAGCAGTATTTTAACGTTCCTTTGATTTAATTTTTCTAAGTAAGATTATTTCAAATTCATGAAGCTAGTTGCACTTTAAAAGACCTTGTAAAGAATGTTTACTGTTAAGAATGTaaaatatttgatgtttttgtgtatttgtttcaAAGGACCTGTGAAATTGAAATTGTTTATGGGTTTTAGCAGTTGTATGTTGCAAAatcttgaaataataaataaattcattttgtt

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025680 lncRNA upstream 17814 31999208 ~ 32002709 (+) False XLOC_012870
TCONS_00026913 lncRNA downstream 17177 32040296 ~ 32041964 (+) True XLOC_012872
TCONS_00026914 lncRNA downstream 102172 32125291 ~ 32126339 (+) True XLOC_012874
TCONS_00027124 lncRNA downstream 156952 32180071 ~ 32363182 (+) True XLOC_012875
TCONS_00025689 lncRNA downstream 432927 32456046 ~ 32457443 (+) True XLOC_012877
TCONS_00027125 lncRNA downstream 513465 32536584 ~ 32537445 (+) True XLOC_012878
TCONS_00025678 mRNA upstream 182763 31610744 ~ 31837760 (+) True XLOC_012867
TCONS_00025674 mRNA upstream 561036 31280984 ~ 31459487 (+) False XLOC_012865
TCONS_00025688 mRNA downstream 421517 32444636 ~ 32449308 (+) True XLOC_012876
TCONS_00025690 mRNA downstream 540435 32563554 ~ 32567412 (+) True XLOC_012879
TCONS_00025691 mRNA downstream 591956 32615075 ~ 32621477 (+) True XLOC_012880
TCONS_00025692 mRNA downstream 757331 32780450 ~ 32784279 (+) True XLOC_012881
TCONS_00025693 mRNA downstream 778484 32801603 ~ 32804805 (+) True XLOC_012882
TCONS_00025679 other upstream 173967 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 1014465 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025649 other upstream 1888692 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 1889971 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 2845315 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025687 other downstream 61820 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 1420145 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 1599798 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 3049857 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 3150753 35173872 ~ 35176134 (+) True XLOC_012939

Expression Profile

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