RNA id: TCONS_00025666


Basic Information

Item Value
RNA id TCONS_00025666
length 561
RNA type processed_transcript
GC content 0.41
exon number 5
gene id XLOC_012861
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30998472 ~ 31023447 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTGAGCACGTTTGAACTGATTTTTTTCTGAGCTTTTTTGTTTCTCATGTAGTTTTTACAGGGACGAAGTCAATTAATTAAGTGTAAAAACCTTTCATCGAATGAAGGCAGATCCATTTTTAACCCTTTTCTGTGTTTCGGTTTCCCTGAGTGATATCGTCTGGTAACGTAAAAGGGCTACATATACGAAATAAAAGGACCTGAGAAGACCCAAATACAGTGGCGGAGTTAATACAAGatgGGGGCAAATGAAGAGAAGAAGGAAAAATGTGGGACCATCTGCCTGAAATATCTCCTTTTCACATTCAATTTTCTGTTTTGGctTGCAGGAGTTGCAGTGATGGCTGTGGGCATCTGGACAGTAATTGAAAAGAGCGACTACATTAGTCTGCTGTCCTCAAAGATTTATGCTGTCTCTGCTTATATACTCATCATGGCAGGGGTGATTGTCATGATTACTGGAGTTTTAGGCTGCTGTGCCACCTTCAAGGAACAAAGACGCCTACTGAGAGTGtattttgtttTACTGCTGTGTATATTTCTGCTGGAGATCCTGGCTG

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1868 Predicted to be involved in cell migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including epidermis; notochord; pharynx; pronephric duct; and ventricular zone. Orthologous to human CD151 (CD151 molecule (Raph blood group)).

Ensembl:

ensembl_id ENSDART00000142552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025646 lncRNA upstream 866795 30129771 ~ 30131831 (+) False XLOC_012854
TCONS_00025647 lncRNA upstream 866795 30129796 ~ 30131831 (+) False XLOC_012854
TCONS_00025634 lncRNA upstream 1824135 29156827 ~ 29174491 (+) False XLOC_012848
TCONS_00025635 lncRNA upstream 1835512 29156849 ~ 29163114 (+) False XLOC_012848
TCONS_00025618 lncRNA upstream 3383923 27571488 ~ 27614703 (+) False XLOC_012839
TCONS_00026905 lncRNA downstream 67185 31073243 ~ 31074445 (+) False XLOC_012863
TCONS_00027120 lncRNA downstream 67185 31073243 ~ 31075016 (+) False XLOC_012863
TCONS_00026906 lncRNA downstream 67204 31073262 ~ 31075016 (+) False XLOC_012863
TCONS_00026907 lncRNA downstream 67927 31073985 ~ 31074789 (+) True XLOC_012863
TCONS_00026908 lncRNA downstream 145747 31151805 ~ 31152607 (+) False XLOC_012864
TCONS_00025661 mRNA upstream 46344 30878196 ~ 30952282 (+) False XLOC_012860
TCONS_00025662 mRNA upstream 64920 30878291 ~ 30933706 (+) False XLOC_012860
TCONS_00025663 mRNA upstream 64951 30915348 ~ 30933675 (+) True XLOC_012860
TCONS_00025660 mRNA upstream 148261 30847237 ~ 30850365 (+) True XLOC_012859
TCONS_00025659 mRNA upstream 424777 30567945 ~ 30573849 (+) True XLOC_012858
TCONS_00025667 mRNA downstream 10321 31016379 ~ 31023447 (+) False XLOC_012861
TCONS_00025668 mRNA downstream 10322 31016380 ~ 31023447 (+) True XLOC_012861
TCONS_00025669 mRNA downstream 50587 31056645 ~ 31068755 (+) False XLOC_012862
TCONS_00025670 mRNA downstream 51085 31057143 ~ 31068420 (+) True XLOC_012862
TCONS_00025671 mRNA downstream 67207 31073265 ~ 31075619 (+) False XLOC_012863
TCONS_00025649 other upstream 866795 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 868074 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 1823418 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025628 other upstream 2694309 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025621 other upstream 3261786 27736724 ~ 27736840 (+) True XLOC_012841
TCONS_00025679 other downstream 839446 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025687 other downstream 1078881 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 2437206 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 2616859 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 4066918 35072976 ~ 35074623 (+) False XLOC_012936

Expression Profile

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