Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025662 |
| length | 778 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 6 |
| gene id | XLOC_012860 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 30878196 ~ 30952282 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ko04990 | Domain-containing proteins not elsewhere classified |
| id | description |
|---|---|
| ZDB-GENE-030131-3513 | Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MTHFSD (methenyltetrahydrofolate synthetase domain containing). |
| ensembl_id | ENSDART00000146041 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025646 | lncRNA | upstream | 746460 | 30129771 ~ 30131831 (+) | False | XLOC_012854 |
| TCONS_00025647 | lncRNA | upstream | 746460 | 30129796 ~ 30131831 (+) | False | XLOC_012854 |
| TCONS_00025634 | lncRNA | upstream | 1703800 | 29156827 ~ 29174491 (+) | False | XLOC_012848 |
| TCONS_00025635 | lncRNA | upstream | 1715177 | 29156849 ~ 29163114 (+) | False | XLOC_012848 |
| TCONS_00025618 | lncRNA | upstream | 3263588 | 27571488 ~ 27614703 (+) | False | XLOC_012839 |
| TCONS_00026905 | lncRNA | downstream | 139537 | 31073243 ~ 31074445 (+) | False | XLOC_012863 |
| TCONS_00027120 | lncRNA | downstream | 139537 | 31073243 ~ 31075016 (+) | False | XLOC_012863 |
| TCONS_00026906 | lncRNA | downstream | 139556 | 31073262 ~ 31075016 (+) | False | XLOC_012863 |
| TCONS_00026907 | lncRNA | downstream | 140279 | 31073985 ~ 31074789 (+) | True | XLOC_012863 |
| TCONS_00026908 | lncRNA | downstream | 218099 | 31151805 ~ 31152607 (+) | False | XLOC_012864 |
| TCONS_00025660 | mRNA | upstream | 27926 | 30847237 ~ 30850365 (+) | True | XLOC_012859 |
| TCONS_00025659 | mRNA | upstream | 304442 | 30567945 ~ 30573849 (+) | True | XLOC_012858 |
| TCONS_00025658 | mRNA | upstream | 313603 | 30511230 ~ 30564688 (+) | True | XLOC_012857 |
| TCONS_00025656 | mRNA | upstream | 368050 | 30507839 ~ 30510241 (+) | False | XLOC_012856 |
| TCONS_00025664 | mRNA | downstream | 64766 | 30998472 ~ 31016439 (+) | False | XLOC_012861 |
| TCONS_00025665 | mRNA | downstream | 64884 | 30998590 ~ 31006528 (+) | False | XLOC_012861 |
| TCONS_00025667 | mRNA | downstream | 82673 | 31016379 ~ 31023447 (+) | False | XLOC_012861 |
| TCONS_00025668 | mRNA | downstream | 82674 | 31016380 ~ 31023447 (+) | True | XLOC_012861 |
| TCONS_00025669 | mRNA | downstream | 122939 | 31056645 ~ 31068755 (+) | False | XLOC_012862 |
| TCONS_00025649 | other | upstream | 746460 | 30129799 ~ 30131831 (+) | True | XLOC_012854 |
| TCONS_00025648 | other | upstream | 747739 | 30129799 ~ 30130552 (+) | False | XLOC_012854 |
| TCONS_00025637 | other | upstream | 1703083 | 29175093 ~ 29175208 (+) | True | XLOC_012849 |
| TCONS_00025628 | other | upstream | 2573974 | 28303891 ~ 28304317 (+) | True | XLOC_012845 |
| TCONS_00025621 | other | upstream | 3141451 | 27736724 ~ 27736840 (+) | True | XLOC_012841 |
| TCONS_00025666 | other | downstream | 64920 | 30998626 ~ 31006058 (+) | False | XLOC_012861 |
| TCONS_00025679 | other | downstream | 911798 | 31845504 ~ 31846556 (+) | True | XLOC_012868 |
| TCONS_00025687 | other | downstream | 1151233 | 32084939 ~ 32088944 (+) | True | XLOC_012873 |
| TCONS_00025732 | other | downstream | 2509558 | 33443264 ~ 33444257 (+) | True | XLOC_012909 |
| TCONS_00025746 | other | downstream | 2689211 | 33622917 ~ 33626850 (+) | False | XLOC_012918 |
