Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025669 |
| length | 1813 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 10 |
| gene id | XLOC_012862 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 31056645 ~ 31068755 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006629 | lipid metabolic process | biological_process |
| GO:0016126 | sterol biosynthetic process | biological_process |
| GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process |
| GO:0008202 | steroid metabolic process | biological_process |
| GO:0008203 | cholesterol metabolic process | biological_process |
| GO:0006694 | steroid biosynthetic process | biological_process |
| GO:0006695 | cholesterol biosynthetic process | biological_process |
| GO:0008299 | isoprenoid biosynthetic process | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004163 | diphosphomevalonate decarboxylase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0016831 | carboxy-lyase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-041114-127 | Predicted to enable diphosphomevalonate decarboxylase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within cholesterol biosynthetic process and isoprenoid biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human MVD (mevalonate diphosphate decarboxylase). |
| ensembl_id | ENSDART00000159316 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00025646 | lncRNA | upstream | 924814 | 30129771 ~ 30131831 (+) | False | XLOC_012854 |
| TCONS_00025647 | lncRNA | upstream | 924814 | 30129796 ~ 30131831 (+) | False | XLOC_012854 |
| TCONS_00025634 | lncRNA | upstream | 1882154 | 29156827 ~ 29174491 (+) | False | XLOC_012848 |
| TCONS_00025635 | lncRNA | upstream | 1893531 | 29156849 ~ 29163114 (+) | False | XLOC_012848 |
| TCONS_00025618 | lncRNA | upstream | 3441942 | 27571488 ~ 27614703 (+) | False | XLOC_012839 |
| TCONS_00026905 | lncRNA | downstream | 4488 | 31073243 ~ 31074445 (+) | False | XLOC_012863 |
| TCONS_00027120 | lncRNA | downstream | 4488 | 31073243 ~ 31075016 (+) | False | XLOC_012863 |
| TCONS_00026906 | lncRNA | downstream | 4507 | 31073262 ~ 31075016 (+) | False | XLOC_012863 |
| TCONS_00026907 | lncRNA | downstream | 5230 | 31073985 ~ 31074789 (+) | True | XLOC_012863 |
| TCONS_00026908 | lncRNA | downstream | 83050 | 31151805 ~ 31152607 (+) | False | XLOC_012864 |
| TCONS_00025667 | mRNA | upstream | 33198 | 31016379 ~ 31023447 (+) | False | XLOC_012861 |
| TCONS_00025668 | mRNA | upstream | 33198 | 31016380 ~ 31023447 (+) | True | XLOC_012861 |
| TCONS_00025664 | mRNA | upstream | 40206 | 30998472 ~ 31016439 (+) | False | XLOC_012861 |
| TCONS_00025665 | mRNA | upstream | 50117 | 30998590 ~ 31006528 (+) | False | XLOC_012861 |
| TCONS_00025661 | mRNA | upstream | 104363 | 30878196 ~ 30952282 (+) | False | XLOC_012860 |
| TCONS_00025671 | mRNA | downstream | 4510 | 31073265 ~ 31075619 (+) | False | XLOC_012863 |
| TCONS_00025672 | mRNA | downstream | 48381 | 31117136 ~ 31206416 (+) | False | XLOC_012864 |
| TCONS_00025673 | mRNA | downstream | 48568 | 31117323 ~ 31206658 (+) | False | XLOC_012864 |
| TCONS_00025674 | mRNA | downstream | 212229 | 31280984 ~ 31459487 (+) | False | XLOC_012865 |
| TCONS_00025675 | mRNA | downstream | 212261 | 31281016 ~ 31316309 (+) | False | XLOC_012865 |
| TCONS_00025666 | other | upstream | 50587 | 30998626 ~ 31006058 (+) | False | XLOC_012861 |
| TCONS_00025649 | other | upstream | 924814 | 30129799 ~ 30131831 (+) | True | XLOC_012854 |
| TCONS_00025648 | other | upstream | 926093 | 30129799 ~ 30130552 (+) | False | XLOC_012854 |
| TCONS_00025637 | other | upstream | 1881437 | 29175093 ~ 29175208 (+) | True | XLOC_012849 |
| TCONS_00025628 | other | upstream | 2752328 | 28303891 ~ 28304317 (+) | True | XLOC_012845 |
| TCONS_00025679 | other | downstream | 776749 | 31845504 ~ 31846556 (+) | True | XLOC_012868 |
| TCONS_00025687 | other | downstream | 1016184 | 32084939 ~ 32088944 (+) | True | XLOC_012873 |
| TCONS_00025732 | other | downstream | 2374509 | 33443264 ~ 33444257 (+) | True | XLOC_012909 |
| TCONS_00025746 | other | downstream | 2554162 | 33622917 ~ 33626850 (+) | False | XLOC_012918 |
| TCONS_00025772 | other | downstream | 4004221 | 35072976 ~ 35074623 (+) | False | XLOC_012936 |
