RNA id: TCONS_00025675


Basic Information

Item Value
RNA id TCONS_00025675
length 376
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_012865
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31280850 ~ 31459487 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041114-96 Predicted to act upstream of or within intracellular signal transduction. Orthologous to human DEF8 (differentially expressed in FDCP 8 homolog).

Ensembl:

ensembl_id ENSDART00000150608

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026909 lncRNA upstream 74543 31188957 ~ 31206473 (+) True XLOC_012864
TCONS_00026908 lncRNA upstream 128409 31151805 ~ 31152607 (+) False XLOC_012864
TCONS_00027120 lncRNA upstream 206000 31073243 ~ 31075016 (+) False XLOC_012863
TCONS_00026910 lncRNA downstream 203269 31519578 ~ 31521691 (+) True XLOC_012866
TCONS_00026911 lncRNA downstream 555712 31872021 ~ 31872676 (+) True XLOC_012869
TCONS_00025680 lncRNA downstream 682899 31999208 ~ 32002709 (+) False XLOC_012870
TCONS_00025681 lncRNA downstream 683025 31999334 ~ 32002084 (+) False XLOC_012870
TCONS_00025682 lncRNA downstream 683044 31999353 ~ 32002709 (+) False XLOC_012870
TCONS_00025673 mRNA upstream 74358 31117323 ~ 31206658 (+) False XLOC_012864
TCONS_00025672 mRNA upstream 74600 31117136 ~ 31206416 (+) False XLOC_012864
TCONS_00025671 mRNA upstream 205397 31073265 ~ 31075619 (+) False XLOC_012863
TCONS_00025669 mRNA upstream 212261 31056645 ~ 31068755 (+) False XLOC_012862
TCONS_00025677 mRNA downstream 94343 31410652 ~ 31411056 (+) True XLOC_012865
TCONS_00025678 mRNA downstream 294435 31610744 ~ 31837760 (+) True XLOC_012867
TCONS_00025688 mRNA downstream 1128327 32444636 ~ 32449308 (+) True XLOC_012876
TCONS_00025690 mRNA downstream 1247245 32563554 ~ 32567412 (+) True XLOC_012879
TCONS_00025691 mRNA downstream 1298766 32615075 ~ 32621477 (+) True XLOC_012880
TCONS_00025666 other upstream 274958 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025649 other upstream 1149185 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 1150464 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 2105808 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025628 other upstream 2976699 28303891 ~ 28304317 (+) True XLOC_012845
TCONS_00025679 other downstream 529195 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025687 other downstream 768630 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 2126955 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 2306608 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 3756667 35072976 ~ 35074623 (+) False XLOC_012936

Expression Profile

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