RNA id: TCONS_00025693


Basic Information

Item Value
RNA id TCONS_00025693
length 2580
RNA type mRNA
GC content 0.39
exon number 6
gene id XLOC_012882
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32801603 ~ 32804805 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATATGAGCTCAGTCTGGGATGTTTCTTTTTTACACAATCCTGCTTTTCCATCTTCTTCATACAAAGGTGGAAAACTCTCTTTGCAGAATAATGGGAGACTCCAATTATCCACTGTTTTCAAAGAATGGAGATGTTAGCATTGGAGGAATTTTTGCTATCCATAGAAAAGAAACATTACCTTCATTTGAGTTCATGCAAAAGCCTCAGCCTCTGTCATGCTCCAGTGTGAATCTGAGAGATTTTCGGCTGGCGCAAACTATGATTTTTGCCGTTGAGGAAATTAATAGAAGTAAAAGTTTGCTCCCAAATGTTTCTATTGGCTACAAGATTTATGATACATGTGGTTCAAGACTGTCCACCATGACTGCAATTATGGGACTGATGAATGGTCAGGACTTTTCAACAGAGGATAGATGCAATGGACAGTCACGATTGCATGCTATCATAGGAGAATCAGAGTCATCTGCCACAATAGTTTTGTCCAGAACAACAGGACCTTTTCGGATTCCAGTGATAAGTCATTCCTCATCATGTGAATGTCTCAGTAATAAAAAAGATTATCCTTCATTCTTCAGGACTATTTCTAGTGATTACCACATGAGTAGAGCACTTGTCTATATAGTTAAGCATTTAGACTGGTCTTGGGTTGGTGCTGTGAACAGTGACAATGATTATGGCAACAATGGGATGGCCATATTTCTGAAAGCAGCCCACGAGGAGGGAATCTGTGTGGAATACTCGGTTAAATTCTACAGAACAGAGCCAGAAAAGCTTAAAAAAGTGGTTGACACTATAAACAAAGGCACTGCTAAAGTAATTGTAGCATTTGTTTCATTTGTGGAGATGGGCTTACTTATTGATCAATTAAGTATTCAGAACATTACAGGCATCCAAATGATAGGTGTGGAACCATGGATAACTGCAAATACATATATCACTTCAAACAGTTTTCGTGCAATGGGAGGTTCGCTGGGGTTtgcaacaaaatatatttatattgaagGATTTGCTGAATATGTTATGACACCATTCTGGAATACAGCTTTTCCATGCTCAGAGAGTGATAGGAATCATTCTCATTATGAATTAATTTGCAGTAGGTATGAGGATCTGCTTGCTCTGAAAAATGACAATAAAGACGTGAATGAACACAGATATTCAAGCAATGTCTACAAAGCAGTTTATGCAGTAGCTCATTCATTGCATGGCCTACTTAACTGCAAAGAACAAGAAGGGTGTGAGAAAGGCCTGACAATACAACCACAgcagGTGGTCAAGgcattgaaaaatattaatttcacaaTTAAGTCAGGTGACAGTGTATGGTTTGACAACACTGGCAGCGTAGTGGCCCTATATGAAGTTGTGAACTGGCAAAAAGACTCAGATGGATCATTTCAGTTCAAATCAGTGGGATTTTATGATGCTATGATGCCTCCATACAAGAATTTAAGGCTTAACACTAAAAACATAGTCTGGGCTGGAGGACAGCTGGAGAAGCCAAGGTCCGTGTGCAGTGAGAGCTGTGCTCCAGGCACCAGAAAGGCTGCACAGAAAGGAAGACCTGTTTGCTGTTATGACTGCATTCCATGTGCAGAAGGAGAAATCAGTAATGAGACAGATTCAATAAACTGCAAGCAGTGTCCAGGGGAATACTGGTCTAACACTGAGAGAAATAGATGTGTTATAAAGGCTGTAGAATTTCTGTCATTCTCAGAAGTTATGGGTATAGTGTTAGTAATTTTCTCACTCTTTGGAGCAGGATTAACTGTGCTCGTTGCCGTTCTGttttacagcaagaaggacactCCCATTGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTACTTTTCTCACTGACTCTGTGCTTCCTCTGTTCTTTAACATTCATTGGTCAGCCAACTAAATGGTCCTGTATGTTGCGTCACACAGCATTTGGCATCACTTTTGTCCTGTGTATCTCATGTGTTTTGGGTAAAACAATAGTAGTGTTAATGGCCTTTAAGGCTACACTCCCAGGAAGTAATGTGATGAAATGGTTTGGTCCTGTACAACAACGACTCAGTGTTTTTGCTTTTACACTTATACAGGTACTTATTTGTGTGCTTTGGCTAACTATATCTCCCCCATTTCCATATAAAAACATGAAGTATTATAAGGAAAAGATCATTCTTGAGTGCAATCTGGGTAATACTATAGGTTTCTGGGCTGTGCTTGGTTACATTGGCCTCCTGGCTGCCCTGTGCTTTCTTCTAGCTTTTCTGGCTCGTAAGTTGCCTGATAATTTCAATGAAGCCAAGTTCATCACTTTCAGTATGCTCATATTTTGTGCTGTATGGATCACATTTATTCCAGCTTATGTCAGTTCTCCTGGAAAATTTACTGTAGCTGTGGAGATTTTTGCCATTTTATCCTCAAGCTTTGGGTTATTAGTTAGCATTTTTGCACCTAAATGTTTTATTATCCTCCTTAAGCCTGAACAAAATACAAAGCAACATGTGATGGGAAAAACAACTTGCAGTCTTTAGCACTTAAACCGTAATCAGGATTTTAAACAACATTGATTATATTCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081029-9 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000163462

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027125 lncRNA upstream 264158 32536584 ~ 32537445 (+) True XLOC_012878
TCONS_00025689 lncRNA upstream 344160 32456046 ~ 32457443 (+) True XLOC_012877
TCONS_00027124 lncRNA upstream 438421 32180071 ~ 32363182 (+) True XLOC_012875
TCONS_00026914 lncRNA upstream 675264 32125291 ~ 32126339 (+) True XLOC_012874
TCONS_00026913 lncRNA upstream 759639 32040296 ~ 32041964 (+) True XLOC_012872
TCONS_00027126 lncRNA downstream 91771 32896576 ~ 32897362 (+) True XLOC_012884
TCONS_00027127 lncRNA downstream 101684 32906489 ~ 32912561 (+) False XLOC_012885
TCONS_00025695 lncRNA downstream 101814 32906619 ~ 32912601 (+) True XLOC_012885
TCONS_00027128 lncRNA downstream 360808 33165613 ~ 33168091 (+) True XLOC_012896
TCONS_00025747 lncRNA downstream 818507 33623312 ~ 33626850 (+) False XLOC_012918
TCONS_00025692 mRNA upstream 17324 32780450 ~ 32784279 (+) True XLOC_012881
TCONS_00025691 mRNA upstream 180126 32615075 ~ 32621477 (+) True XLOC_012880
TCONS_00025690 mRNA upstream 234191 32563554 ~ 32567412 (+) True XLOC_012879
TCONS_00025688 mRNA upstream 352295 32444636 ~ 32449308 (+) True XLOC_012876
TCONS_00025678 mRNA upstream 963843 31610744 ~ 31837760 (+) True XLOC_012867
TCONS_00025694 mRNA downstream 39634 32844439 ~ 32847744 (+) True XLOC_012883
TCONS_00025696 mRNA downstream 111546 32916351 ~ 32919974 (+) False XLOC_012886
TCONS_00025697 mRNA downstream 111546 32916351 ~ 32923910 (+) True XLOC_012886
TCONS_00025698 mRNA downstream 145675 32950480 ~ 32955791 (+) False XLOC_012887
TCONS_00025699 mRNA downstream 145734 32950539 ~ 32954131 (+) True XLOC_012887
TCONS_00025687 other upstream 712659 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 955047 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 1795545 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025649 other upstream 2669772 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 2671051 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025732 other downstream 638459 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 818112 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 2268171 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 2369067 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 3002043 35806848 ~ 35806966 (+) True XLOC_012944

Expression Profile

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