RNA id: TCONS_00026913


Basic Information

Item Value
RNA id TCONS_00026913
length 523
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_012872
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32040296 ~ 32041964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGGTTTCATAATAATTTACCCGATGAACGAGGTGAATGtctgaggtaaaattggttttatattcacacattctgactttctccctaataatataatttcagaagagtATTATTTGCTAATCCCTAATATcatgttagcagccaatgactatcaaagtacaacattgttcactgtcAGTTTAATagcgctaatgttgtttttaaatcatatttacatgtgatttcaatCATTCTAATAATagtactatggtaaacaatacTGAGAGTGTGTCACACAAGCTGTCATTAatcgaatgtgtgaatataaaatccACTTTACCTTAGTTGAGGTTACTCTGTGAGCCAAAGTGAAGCACAGTTGAGcaaaagaccaggggcctcatAAAGCCTTCAGCTCCGGGTCATCATCTGTCTCCCAAAGTCTAATAAACACACCACAAAGCAAACAAAGTCACAACGCTGTAACTAAAcaagacatttattatattagCAAACTGATGCTACTAGCCGTCTTAtcatatg

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025686 lncRNA upstream 17177 32018101 ~ 32023119 (+) False XLOC_012871
TCONS_00027123 lncRNA upstream 17177 32020523 ~ 32023119 (+) True XLOC_012871
TCONS_00026912 lncRNA upstream 17211 32020096 ~ 32023085 (+) False XLOC_012871
TCONS_00025680 lncRNA upstream 37587 31999208 ~ 32002709 (+) False XLOC_012870
TCONS_00026914 lncRNA downstream 83327 32125291 ~ 32126339 (+) True XLOC_012874
TCONS_00027124 lncRNA downstream 138107 32180071 ~ 32363182 (+) True XLOC_012875
TCONS_00025689 lncRNA downstream 414082 32456046 ~ 32457443 (+) True XLOC_012877
TCONS_00027125 lncRNA downstream 494620 32536584 ~ 32537445 (+) True XLOC_012878
TCONS_00027126 lncRNA downstream 854612 32896576 ~ 32897362 (+) True XLOC_012884
TCONS_00025678 mRNA upstream 202536 31610744 ~ 31837760 (+) True XLOC_012867
TCONS_00025674 mRNA upstream 580809 31280984 ~ 31459487 (+) False XLOC_012865
TCONS_00025688 mRNA downstream 402672 32444636 ~ 32449308 (+) True XLOC_012876
TCONS_00025690 mRNA downstream 521590 32563554 ~ 32567412 (+) True XLOC_012879
TCONS_00025691 mRNA downstream 573111 32615075 ~ 32621477 (+) True XLOC_012880
TCONS_00025692 mRNA downstream 738486 32780450 ~ 32784279 (+) True XLOC_012881
TCONS_00025693 mRNA downstream 759639 32801603 ~ 32804805 (+) True XLOC_012882
TCONS_00025679 other upstream 193740 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 1034238 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025649 other upstream 1908465 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 1909744 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025637 other upstream 2865088 29175093 ~ 29175208 (+) True XLOC_012849
TCONS_00025687 other downstream 42975 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025732 other downstream 1401300 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 1580953 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 3031012 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 3131908 35173872 ~ 35176134 (+) True XLOC_012939

Expression Profile

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