RNA id: TCONS_00025698


Basic Information

Item Value
RNA id TCONS_00025698
length 4230
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_012887
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32950480 ~ 32955791 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAGTGTTCAATCAGGTCATTTGCAGTTGGCTGTCACGAATGAGCTAAACCTTGAAGATGCTTCTCTTTCTTTACACACTCCTGCTTTTCCATCACCTTCACACTAAGGCTGGAAACACTCTTTGCCGAATAATGGGAGACCCTCAATATCCACTGCTTTCCACAGATGGAGACATAACTATTGGAGCTCTTTTTCCAGTCCACAGCACAGAAACATTGCCTTCATTTGAATTTACAAAACAACCTCAGCTTCTATCATGCTCCagTGTGTACCTGAGAGATTTTCGTCTGGCACAAATCCTGATCTTTGCCATTGAGGAGATAAACAGAAGTGTACAATTGCTACCAAATATTTCAATTGGTTATAGAATCTATGATACCTGTGGTTCAAGACAGTCTACCATGAGTGCAATTATGGGACTAATGAATGGTCAGGAGTTTGGAGCAGGTGAGAGATGTAATGGACGGTCTCCTATACATGCAATCATTGGTGAATCAGAGTCTTCTGCAACAGTGATACTGTCCAGAACTACGGGACCTTTTAAAATTCCAGTGataAGTCACTCAGCCTCATGTGAATGTCTCAGTAATAAGAAAGACTACCCATCATTCTTCAGGACTATGGCTAGTGATTACCATCAGAGCAGAGCACTTGCTTATCTAGTTAAGGACTTAGGCTGGTCTTGGGTGGGAGCTGTGAGCAGTGACAATGAATATGGAAACTATGGAATGTCCATATTTCTGAAAATAGCCCAAGAAGTGGGGATTTGTGTAGAATATTATGCCAAATTCTACCGAACAGAGGCAGAAAATCTCCATAAAGCAGTGAATATGATTAAAAAAGGCACAGCAAAAGTAATTGTTGCTTTTGTTTCACTTCCAGAAATGGGCATACTTGTTGATCAGTTAAGCATTGAGAACATTACAGGACTCCAAATGATTGGTGTGAAATCATGGATAACTGTAAAAAGTTTCATCACTCCAAGCAGCTTTCATGTGCTTAAAGGGTCATTGGGGATTGCGGTGAAAAAAATCAGTGTTGAAGGCTTTGCTGAATATGCCATTAACGAATTTTGGAAAAAAGGTTTTCCATGTTTAAAGAGTGAGGTTAATTCATCTCGATATGCATTAAGTTGTAGCAGATATGAGGATCTCTTTGTGCTAAAATCAATCAGTGAGGATGTGCCTGAACAAAGATATGCAAGCTACGTGTACAAAGCAGTTTATGCTGTGGCACATTCATTACACAGTCTATTCAATTGTAAAGAACACGAAGGTTGTGAGAAAGACCTGACAATACAACCACAGCAGGTTGTTGAGGCTTTAAAAAAGGTCAAGTTCACCATAAAAACAGGGGATCATGTGTGGTTTGACAGCACTGGTGCCGCTGTAGCCCAATATGATGTTGTAAATTTACAGCTGGACTCATATGGTTCAACACTTTTTAAATCAGTGGGATACTATGATGCTTCATTGCCCCCTGAACAGCAGTTTGTGCTAAACACTACAAACATCATTTGGGCTGGAGGAGAGAAGGTGAGGTCCGTGTGCAGTGAAAGCTGTCCTCCAGGCACCAGGAAAGCTACACAGAAAGGAAGACCTGTCTGCTGTTATGACTGTATTCAATGTGCAGATGGAGAAATTAGTAATGAGACAGATTCGAATAATTGCAAACAGTGCCCAGAGGAATACTGGCCTAATACTGAGAAAAGTAAATGTGTGTTAAAGATTGTAGAGTTTCTTTCATTCACAGAGCTTATGGGCATCGTGTTAGTTATTTTTTCACTGTTTGGGGTAACATTGACTGTATTGGTGACCTTCCTGttttacagcaagaaggacactCCTATAGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTCCTCTTCTCACTGACTCTGTGTTTCCTCTGTTCACTCACTTTCATTGGCCGTCCCACTGAGTGGTCCTGTATGTTGCGTCACACAACATTTGGGATCACTTTTGTCCTCTGTATCTCTTGTATTCTGGGAAAAACAATAGTGGTGTTAATGGCTTTCAGAGCTACAATTCCAGGTAATAATATGATAAAATGGTTTGGTCCTGTACAACAACGACTCAGTGTTCTTGCTTTTACGCTTATACAGATTCTTATATGTGTGGTTTGGCTGACAATTTCACCTCCATTTCCaagcaaaaacattaaatattataaagaaaAGATTATTCTTGAGTGCAGTCTGGGTTCTACTATAGGTTTCTGGATTGTTCTGGGCTATATTGGCTTGCTAGCTGTCTTGTGCTTCATTTTGGCTTTTTTGGCTCGCACATTGCCTGACAACTTTAATGAAGCAAAATTCATCACATTCAGTATACTCATATTCTGTGCAGTATGGATCACATTTATTCCAGCGTATGTCAGTTCTCCTGGAAAATTGACTGTAGCTGTGGAGATATTTGCCATTTTAGCCTCGAGCTTTGGCTTACTTTTTTGCATATTTGCACCTAAATGTTACATTATCCTGTTCAAGCCTGAACAAAATACAAAGCAACATATAATGGGAAAAACAATATCCAAGAACTGAGAAATAAACTAACATTTTCTCtagattgttgtttttttttattgattattaattgaCAAAATGTGTCCCCCAAGTCCTGTTAATTAAGTTAACCAGGCAATTTAGGTTAATTAGTTAAGTCATTGGATAACATTGGTTTATTTTGTAGCCAATCCAAAAAATAATGGGGGTGGCATGGTgcctctgtggttagcactgttgcctcacagcaaaaaggtcactggttcgagtcccagctaggccagttggcatttctgtatggagtttgcatgttctccctgtgtttttgTGGGTTTCTTTCAAGTGCTTCGGTTGGTCATAGTGAATGTGAGAGtctatgagtgtttcccagtactggattgtggctggacgggcatctgctgcataaagcatatgccgaaatagttggcggtggcaacccctgataaagtgactcagccgaaggaaaatcataaaattaatatataaaatgggTGTTACGGTACATATATTTGTCCCAGACGGTTCGAGGCTCGCGGTTCTGTTTACCTTTTCCCACAACAAATACAATCAGTCCAGATGTACAGTGTCTGCTAGACAGAAAAGTTCACAGCAGTGCAACAACTGAAGAGCCATTTTCAAAGGATGCTTGATGGTGTCTGAAAACATGACAGCAGTTTTCGGTAGTTGTTCCGTTATTTTGCCATTGTCATCCCAACTTTCTAAAGTTTTTCTGATTGGTCCATCCACTGCATGGAAATTGACAAGTATGTATGACAAATGAGGACTCTTGTGGGTGGAAACTGAAATAAACATGCGGTGCTGCAAAAGACGCAAGTGTATAATGGTCATTCACGTCCATCaaacaatgaaaatataaaatactgtCTAATTATGTGAGCGCGTAAGTCAGTCTGTAAGCAACTGACTTatctactcacacacacacacataacttgTTTTCCGCTACACCTGCTGATATGAATGGCACAACACTAGCCTTTTCTTCAAAATAGATTTCAGCCtattcaaaattaaaattctgttcaGAAAAGCAAATACCCATTTGTTTTTATTCCTGTTGCACCACACTCCACAAGGAAATGTGACCCAGAACCGAGGTATGTATCGAACTGTGACTCCTGTGTACtgttaaaacaaatgcatttgaagacattatttattcattcattttcttttcggcttaatatctttattaatctggtgtcgccacaatgaaccaccaatgtatccagtatatgttttacgcagcggatgcccttccagctacaacccaccactgggaaacatacatacacactcattcacacacacatacactacaaataatatagcttacccaattcacctatacgggatgtttttgtacttgtgggggaaactggagcacctggaggaaacccacgagagcATGAGAAtaatgcaaacttcacacagaaagtccaactgaccaagccgaggctcgaaccagcaatcttcttgctacccactgtgatGCCCTAGAGGACATAATGCAGAGAATTTTATTAGGCGGCCATTAAggttatatatttatgtaatgcTTGCATCATGTTACTGTTTGAGTGTTTCAATCATTTATGTATGTAGTGATAATTTGTCTGTGTAaagcactttattttattaattaaaagtttaaaag

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-159 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000167901

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025695 lncRNA upstream 37879 32906619 ~ 32912601 (+) True XLOC_012885
TCONS_00027127 lncRNA upstream 37919 32906489 ~ 32912561 (+) False XLOC_012885
TCONS_00027126 lncRNA upstream 53118 32896576 ~ 32897362 (+) True XLOC_012884
TCONS_00027125 lncRNA upstream 413035 32536584 ~ 32537445 (+) True XLOC_012878
TCONS_00025689 lncRNA upstream 493037 32456046 ~ 32457443 (+) True XLOC_012877
TCONS_00027128 lncRNA downstream 209822 33165613 ~ 33168091 (+) True XLOC_012896
TCONS_00025747 lncRNA downstream 667521 33623312 ~ 33626850 (+) False XLOC_012918
TCONS_00027129 lncRNA downstream 667951 33623742 ~ 33626850 (+) True XLOC_012918
TCONS_00026915 lncRNA downstream 769785 33725576 ~ 33729892 (+) False XLOC_012922
TCONS_00025753 lncRNA downstream 779544 33735335 ~ 33747115 (+) True XLOC_012923
TCONS_00025697 mRNA upstream 26570 32916351 ~ 32923910 (+) True XLOC_012886
TCONS_00025696 mRNA upstream 30506 32916351 ~ 32919974 (+) False XLOC_012886
TCONS_00025694 mRNA upstream 102736 32844439 ~ 32847744 (+) True XLOC_012883
TCONS_00025693 mRNA upstream 145675 32801603 ~ 32804805 (+) True XLOC_012882
TCONS_00025692 mRNA upstream 166201 32780450 ~ 32784279 (+) True XLOC_012881
TCONS_00025700 mRNA downstream 23375 32979166 ~ 32982171 (+) True XLOC_012888
TCONS_00025701 mRNA downstream 36855 32992646 ~ 32995792 (+) True XLOC_012889
TCONS_00025702 mRNA downstream 41046 32996837 ~ 33000125 (+) True XLOC_012890
TCONS_00025703 mRNA downstream 54037 33009828 ~ 33013057 (+) True XLOC_012891
TCONS_00025704 mRNA downstream 76412 33032203 ~ 33036740 (+) True XLOC_012892
TCONS_00025687 other upstream 861536 32084939 ~ 32088944 (+) True XLOC_012873
TCONS_00025679 other upstream 1103924 31845504 ~ 31846556 (+) True XLOC_012868
TCONS_00025666 other upstream 1944422 30998626 ~ 31006058 (+) False XLOC_012861
TCONS_00025649 other upstream 2818649 30129799 ~ 30131831 (+) True XLOC_012854
TCONS_00025648 other upstream 2819928 30129799 ~ 30130552 (+) False XLOC_012854
TCONS_00025732 other downstream 487473 33443264 ~ 33444257 (+) True XLOC_012909
TCONS_00025746 other downstream 667126 33622917 ~ 33626850 (+) False XLOC_012918
TCONS_00025772 other downstream 2117185 35072976 ~ 35074623 (+) False XLOC_012936
TCONS_00025779 other downstream 2218081 35173872 ~ 35176134 (+) True XLOC_012939
TCONS_00025784 other downstream 2851057 35806848 ~ 35806966 (+) True XLOC_012944

Expression Profile

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