G437843


Basic Information

Item Value
gene id G437843
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1137586 ~ 1167949 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU502544
GCTGGTGTGTTTAGGTTGAACATATATAAAACATTTCTTAAAACAAACAAACAAACAAACAAAAAACACTTTAGAATAAAGTAATTCTGCTAGTTAACAGAATATTCTGCCTGATTCCTCCTCATAAAATTCAATACCTTCTGAAAATGACAGGCATTCCATATTTGTGCTCTTCTCCAAATAACATGCATAGTAAATTCATTTCTGTTTTTTTTTTAACAAAAAAAAGGATATGCAAACAATCCCCCCCCCCCAAATTCTTTAACAAAACCAACAAACAAAAAAAAAAAAAATTCTGAGCAAAACATAGAAAGCCCACAGTGTTTGTAACACATCTAACATGTTCCTACACCCCATGAAGAAGCAATATTCCAGAATCCAAAATCTCACTTCCAGTCTGGATTCATCTAATCTGTGGCTTTCTTCTGAAACTGATCAAAATGAAACCAATACACCTCTTGACCTCAGATAGTTGCTTATCAACCAGCACACAGAGAACTCTCTCACCTACAGGTTTCCACAGTCTTATCTGAACAGCCTTGCAGCTTTAAGACACAAGATATAACTTGCTAGTGTTCACGTCTGATCAACTTGACCCCAAAGAGGACGCCACAAAACATAATGGTGTCTGCATAAAGACAAAGATGCAGAAGGCAAGATGTCAGCTCTTAACTGTGAGTTAAGGTTAAAGTTCAGGCTTCCTACACCTTTCTTTTGGCCCCTGAGTTCAGTGAAGGTATCAGCACCTGTTAGATGGACCAACATCTGAGGAGCCCGAGGTGTTTTAAAGGGAATCAGCATGAACGAGGTATTTCAAAACGCCATAACGGAACAGAACGCCAACTAAAGTGTATTATTTGGTGTGTTGATTAGACAGTGAAGGATGCAAAGGTTCTTGCAGGTACTTTGGCTTTTTAAAGAGATGTTTTGCATGAAAAAGGTGTTGAAAGAAATCTGAGTTTTAATTTAGGAGCATATATTAAGAACTATCAGGGCATGTATTATAATAATAATAATAATAATAATAATAATGATAATAATAATAAGATCATTTTAAAAGGCCGGACTGACTTTTTGTATATTCAAAAGGAGTAAAAGTTCCAAAATGTCCATCATCTAATAAATAATTGTTCAAGCATGTTTCCATCTAAATGTGCATAAGTTTTGGCAGACTCTTTTCATAAGAGCTAGGTACAGAGGAGGGTCAAGAGCATGTTAATTTAAACCAGCATCTCTCCCATGGTCACTGTGTAGATGCAGAGACTGATTTAGTGAGATCAGTCAGGTAGGGAAGGAAAGTTTGTTGAAATACTGTGCAAATCTACATAATGGACTCCTTGTCACAGGGTTTAGGTCCAGCAACCTCTTCCAATTCAAAGTTTCCCTGTTTCTCGATAAGTGGAGAGCTTTCTGGCCTGGAGGCGGGATCTTCTTCTTTCTCCACTCGCACCTTAGTTAGCTCAATTCCCTCCTTTTTACTGGAAGTGCGATCCACGAAATACTGCAGAAGACCTGCTCCGTAGGCGTCACCTTCAACATTGATGACGGTGCAAGTGCGATCTCTAAATGAAGAAAAAACACAGAAAAGACAA
>TU502547
GCTGGTGTGTTTAGGTTGAACATATATAAAACATTTCTTAAAACAAACAAACAAACAAACAAAAAACACTTTAGAATAAAGTAATTCTGCTAGTTACAGTTACAGTTAAACATTCACCAGTAAATGCTATTAACAGAATATTCTGCCTGATTCCTCCTCATAAAATTCAATACCTTCTGAAAATGACAGGCATTCCATATTTGTGCTCTTCTCCAAATAACATGCATAGTAAATTCATTTCTGTTTTTTTTTTAACAAAAAAAAGGATATGCAAACAATCCCCCCCCCCCAAATTCTTTAACAAAAACAAACAAACAAAAAACAGAAAAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU502544 False 1592 lncRNA 0.38 2 1137586 1139213
TU502547 True 334 lncRNA 0.29 2 1137586 1167949

Neighbor

gene id symbol gene type direction distance location
CI01000308_01132580_01134190 FKRP coding upstream 3172 1132025 ~ 1134414 (+)
CI01000308_01003736_01006059 NA coding upstream 130469 1003736 ~ 1007117 (+)
CI01000308_00983925_00991307 NA coding upstream 146197 983925 ~ 991389 (+)
CI01000308_00836074_00942387 DSCAML1 coding upstream 195199 836074 ~ 942387 (+)
CI01000308_00770560_00784179 NA coding upstream 351790 770272 ~ 785796 (+)
CI01000308_01594565_01626825 CADM2, CADM2B coding downstream 426616 1594565 ~ 1626825 (+)
CI01000308_01645574_01648364 CADM2 coding downstream 477584 1644246 ~ 1648567 (+)
CI01000308_01667660_01683460 MIPEP coding downstream 499711 1667660 ~ 1683598 (+)
CI01000308_01751621_01754826 NA coding downstream 583592 1751541 ~ 1755020 (+)
CI01000308_01757068_01765055 NA coding downstream 587921 1755870 ~ 1766109 (+)
G437837 NA non-coding upstream 23315 1110758 ~ 1114271 (+)
G437985 NA non-coding upstream 50343 1085336 ~ 1087243 (+)
G437952 NA non-coding upstream 79543 1054615 ~ 1058043 (+)
G437854 NA non-coding upstream 89088 1046446 ~ 1048498 (+)
G437853 NA non-coding upstream 244351 878439 ~ 893235 (+)
G438099 NA non-coding downstream 244405 1412354 ~ 1412696 (+)
G438100 NA non-coding downstream 244802 1412751 ~ 1413110 (+)
G438032 NA non-coding downstream 253071 1421020 ~ 1533788 (+)
G438033 NA non-coding downstream 275424 1443373 ~ 1463430 (+)
G438036 NA non-coding downstream 366069 1534018 ~ 1541865 (+)

Expression


Co-expression Network