RNA id: TU502544


Basic Information

Item Value
RNA id TU502544
length 1592
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G437843
representative False

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1137586 ~ 1167949 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGGTGTGTTTAGGTTGAACATATATAAAACATTTCTTAAAACAAACAAACAAACAAACAAAAAACACTTTAGAATAAAGTAATTCTGCTAGTTAACAGAATATTCTGCCTGATTCCTCCTCATAAAATTCAATACCTTCTGAAAATGACAGGCATTCCATATTTGTGCTCTTCTCCAAATAACATGCATAGTAAATTCATTTCTGTTTTTTTTTTAACAAAAAAAAGGATATGCAAACAATCCCCCCCCCCCAAATTCTTTAACAAAACCAACAAACAAAAAAAAAAAAAATTCTGAGCAAAACATAGAAAGCCCACAGTGTTTGTAACACATCTAACATGTTCCTACACCCCATGAAGAAGCAATATTCCAGAATCCAAAATCTCACTTCCAGTCTGGATTCATCTAATCTGTGGCTTTCTTCTGAAACTGATCAAAATGAAACCAATACACCTCTTGACCTCAGATAGTTGCTTATCAACCAGCACACAGAGAACTCTCTCACCTACAGGTTTCCACAGTCTTATCTGAACAGCCTTGCAGCTTTAAGACACAAGATATAACTTGCTAGTGTTCACGTCTGATCAACTTGACCCCAAAGAGGACGCCACAAAACATAATGGTGTCTGCATAAAGACAAAGATGCAGAAGGCAAGATGTCAGCTCTTAACTGTGAGTTAAGGTTAAAGTTCAGGCTTCCTACACCTTTCTTTTGGCCCCTGAGTTCAGTGAAGGTATCAGCACCTGTTAGATGGACCAACATCTGAGGAGCCCGAGGTGTTTTAAAGGGAATCAGCATGAACGAGGTATTTCAAAACGCCATAACGGAACAGAACGCCAACTAAAGTGTATTATTTGGTGTGTTGATTAGACAGTGAAGGATGCAAAGGTTCTTGCAGGTACTTTGGCTTTTTAAAGAGATGTTTTGCATGAAAAAGGTGTTGAAAGAAATCTGAGTTTTAATTTAGGAGCATATATTAAGAACTATCAGGGCATGTATTATAATAATAATAATAATAATAATAATAATGATAATAATAATAAGATCATTTTAAAAGGCCGGACTGACTTTTTGTATATTCAAAAGGAGTAAAAGTTCCAAAATGTCCATCATCTAATAAATAATTGTTCAAGCATGTTTCCATCTAAATGTGCATAAGTTTTGGCAGACTCTTTTCATAAGAGCTAGGTACAGAGGAGGGTCAAGAGCATGTTAATTTAAACCAGCATCTCTCCCATGGTCACTGTGTAGATGCAGAGACTGATTTAGTGAGATCAGTCAGGTAGGGAAGGAAAGTTTGTTGAAATACTGTGCAAATCTACATAATGGACTCCTTGTCACAGGGTTTAGGTCCAGCAACCTCTTCCAATTCAAAGTTTCCCTGTTTCTCGATAAGTGGAGAGCTTTCTGGCCTGGAGGCGGGATCTTCTTCTTTCTCCACTCGCACCTTAGTTAGCTCAATTCCCTCCTTTTTACTGGAAGTGCGATCCACGAAATACTGCAGAAGACCTGCTCCGTAGGCGTCACCTTCAACATTGATGACGGTGCAAGTGCGATCTCTAAATGAAGAAAAAACACAGAAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU502534 lncRNA upstream 23315 1110758 ~ 1114271 (+) False G437837
TU502533 lncRNA upstream 23315 1111369 ~ 1114271 (+) True G437837
TU502698 lncRNA upstream 50343 1085336 ~ 1087243 (+) True G437985
TU502663 lncRNA upstream 79543 1054615 ~ 1058043 (+) True G437952
TU502560 lncRNA upstream 89088 1046446 ~ 1048498 (+) True G437854
TU502834 lncRNA downstream 273141 1412354 ~ 1412696 (+) True G438099
TU502835 lncRNA downstream 273538 1412751 ~ 1413110 (+) True G438100
TU502750 lncRNA downstream 281807 1421020 ~ 1533788 (+) True G438032
TU502752 lncRNA downstream 304160 1443373 ~ 1463430 (+) True G438033
TU502757 lncRNA downstream 394805 1534018 ~ 1541865 (+) True G438036
CI01000308_01132580_01134190.mRNA mRNA upstream 3172 1132025 ~ 1134414 (+) True CI01000308_01132580_01134190
CI01000308_01003736_01006059.mRNA mRNA upstream 130469 1003736 ~ 1007117 (+) True CI01000308_01003736_01006059
CI01000308_00983925_00991307.mRNA mRNA upstream 146197 983925 ~ 991389 (+) True CI01000308_00983925_00991307
CI01000308_00836074_00942387.mRNA mRNA upstream 195199 836074 ~ 942387 (+) True CI01000308_00836074_00942387
CI01000308_00770560_00784179.mRNA mRNA upstream 351790 770272 ~ 785796 (+) True CI01000308_00770560_00784179
CI01000308_01594565_01626825.mRNA mRNA downstream 455352 1594565 ~ 1626825 (+) True CI01000308_01594565_01626825
CI01000308_01645574_01648364.mRNA mRNA downstream 506320 1645533 ~ 1648567 (+) False CI01000308_01645574_01648364
CI01000308_01667660_01683460.mRNA mRNA downstream 528447 1667660 ~ 1683598 (+) True CI01000308_01667660_01683460
CI01000308_01751621_01754826.mRNA mRNA downstream 612328 1751541 ~ 1755020 (+) True CI01000308_01751621_01754826
CI01000308_01757068_01765055.mRNA mRNA downstream 616657 1755870 ~ 1766100 (+) False CI01000308_01757068_01765055

Expression Profile