G444954


Basic Information

Item Value
gene id G444954
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 965347 ~ 965903 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU510775
NNAAAAAAACACTTCTTGGAGCTGGATCATGTGCTTATTGCATCTGGTTATTAATAGTGTTCAGAAAAAACACCTGCTTTCATTTCTGAAGACTTTCATTTCTGAAATGTGGATATACAGATGTTGCTTATAGTACATGTTTCTGTTTCAAATACAATAATAAAAATTTAATTATAAAACACTGTTTTCTCCCATTCATTTTTTGATTAGTTTTTTTTAGTTTGTTGATTAGATTTACTTGACCTGCTCAGACCTGACCTGCTTGACCTGTTGATTTTGCAACTTTGTGAGAAAAGGGTGTTAATTGTTGTTACTGCACTCTGAAAACAGTGTCTCACAAGTTGAGTGCATTTCAAACATGATTTTCTGTTTTTACATTTTCTTAAGGGAACTTTGTAGCTTGCCAGTGGAAAGTCTGAAGATACAGTAGATAATATTCAATTTGTCAGAATGTAACAAACACAAATACAAGGTCACGTACAAATAAATGCGTATTGTTGAGAATCACAAGGTATTTGATGTATTTTCTAAAAATGTAAAACAAGACAATAAAACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU510775 True 557 lncRNA 0.31 1 965347 965903

Neighbor

gene id symbol gene type direction distance location
CI01000313_00897217_00899112 NA coding downstream 66140 895999 ~ 899207 (-)
CI01000313_00822941_00823338 NA coding downstream 142009 822459 ~ 823338 (-)
CI01000313_00819117_00821323 PCGF5A coding downstream 143873 818817 ~ 821474 (-)
CI01000313_00713063_00727810 NA coding downstream 237537 713006 ~ 727810 (-)
CI01000313_00698894_00703473 FAM98A coding downstream 261874 698894 ~ 703473 (-)
CI01000313_00977797_00978570 NA coding upstream 11408 977311 ~ 978584 (-)
CI01000313_00982839_00997272 NA coding upstream 16926 982829 ~ 997590 (-)
CI01000313_01000035_01002069 NA coding upstream 34111 1000014 ~ 1002069 (-)
CI01000313_01019710_01027993 PTEN, PTENA coding upstream 53670 1019573 ~ 1027993 (-)
CI01000313_01043093_01055957 PAPSS2A, PAPSS2 coding upstream 76281 1042184 ~ 1055957 (-)
G444834 NA non-coding downstream 6978 951568 ~ 958369 (-)
G444813 NA non-coding downstream 14209 949453 ~ 951138 (-)
G444909 NA non-coding downstream 189141 776005 ~ 776206 (-)
G444892 NA non-coding downstream 236471 728621 ~ 728876 (-)
G444812 NA non-coding downstream 271691 691552 ~ 693656 (-)
G444820 NA non-coding upstream 46724 1012627 ~ 1018244 (-)
G444959 NA non-coding upstream 126207 1092110 ~ 1093005 (-)
G444969 NA non-coding upstream 152599 1118502 ~ 1119646 (-)
G444981 NA non-coding upstream 233312 1199215 ~ 1215186 (-)
G444977 NA non-coding upstream 272249 1238152 ~ 1300489 (-)
G444714 NA other downstream 565251 397607 ~ 400096 (-)
G444653 NA other downstream 591883 371520 ~ 373464 (-)

Expression


Co-expression Network