CI01000313_00819117_00821323 (PCGF5A)


Basic Information

Item Value
gene id CI01000313_00819117_00821323
gene name PCGF5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 818817 ~ 821474 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000313_00819117_00821323.mRNA
ACTCTCTCAACAATAATGTCTTCAGATCAGAGTTACAACTGCCTCAAAACAGAGGCAATGATGAAATCAACGTGGCAACCCTGTGTAGGAGCACAGGCAGCACTGTGACTCTAGCTTGTGATCTCCTTACCTCTGTGACCTTTGAGTCGAGATGGCGACCCACCGAAAGCACCTGGTCCGAGATTTCAACCGGCACATCACCTGCTCAATTTGCCATGGATACCTGATCAAGCCCACCGCTGTCACGGAATGCCTGCACACCTTTTGTAAGAGTTGTATCGTTCAGCACTTTGAGGAGAGTAATGAGTGTCCAGAATGTGGGATACAGGTCCATGAAACCAACCCTTTAGAGATGCTGAGGCTAGATAAGACCCTGGAGGAGATCATCTTCAAGCTGGTGCCTGGACTTAGAGAGAAGGAGGAACAACAGGAAAGTGAGTTTTGGAGAAAAAATAAAATCAAAGCAAATGGAGAAGATGGCCCTAGGGCTAAGAAAGCTCGCCTGAGTGATGATGAGGATGATGATGGGAAAGGTGGAGACTACCACAGGAGTGATCCTCAGATCGCTGTTTGTCTGGACTGTCTACGTAACAATGGCCAATCAGGAGAAAGCATAGTTAAGGTGCACAGAGTCAGTATAGTTTAATATATTGTGTGTATATGTTGCGATGTATGTTTGTGTATGTGTGTGAGCATGTTTATAATTTGCACCCCTGGTCTTTCTGAAATAGGGTTTAATGAAGAAATTCATCCGTTGCTCCACCCGTGTTACAGTGGGAACCATTAAGAAGTTCCTCTGTGTAAAACTGAAGCTGCCAAGCTCTTATGAGGTAAAATACTGTTTTATTACAGTCTCACTGAGCTGTCAACACAGGCAAACTGCATTTGTGTGTGTGTACTGAGAATTAATAGGTTTCTTTCACAGTTCAATACAAATATTAATAAA

Function

symbol description
pcgf5a Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

GO:

id name namespace
GO:0031519 PcG protein complex cellular_component

KEGG:

id description
K11489 PCGF5; polycomb group RING finger protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000313_00819117_00821323.mRNA True 946 mRNA 0.44 5 818817 821474

Neighbor

gene id symbol gene type direction distance location
CI01000313_00713063_00727810 NA coding downstream 91007 713006 ~ 727810 (-)
CI01000313_00698894_00703473 FAM98A coding downstream 115344 698894 ~ 703473 (-)
CI01000313_00311563_00321609 NA coding downstream 497208 311472 ~ 321609 (-)
CI01000313_00294667_00301218 NA coding downstream 517599 294104 ~ 301218 (-)
CI01000313_00117452_00118526 NA coding downstream 700291 116594 ~ 118526 (-)
CI01000313_00822941_00823338 NA coding upstream 985 822459 ~ 823338 (-)
CI01000313_00897217_00899112 NA coding upstream 74525 895999 ~ 899207 (-)
CI01000313_00977797_00978570 NA coding upstream 155837 977311 ~ 978584 (-)
CI01000313_00982839_00997272 NA coding upstream 161355 982829 ~ 997590 (-)
CI01000313_01000035_01002069 NA coding upstream 178540 1000014 ~ 1002069 (-)
G444909 NA non-coding downstream 42611 776005 ~ 776206 (-)
G444892 NA non-coding downstream 89941 728621 ~ 728876 (-)
G444812 NA non-coding downstream 125161 691552 ~ 693656 (-)
G444799 NA non-coding downstream 274743 542077 ~ 544074 (-)
G444741 NA non-coding downstream 387193 431392 ~ 431624 (-)
G444813 NA non-coding upstream 127979 949453 ~ 951138 (-)
G444834 NA non-coding upstream 130094 951568 ~ 958369 (-)
G444954 NA non-coding upstream 143873 965347 ~ 965903 (-)
G444820 NA non-coding upstream 191153 1012627 ~ 1018244 (-)
G444959 NA non-coding upstream 270636 1092110 ~ 1093005 (-)
G444714 NA other downstream 418721 397607 ~ 400096 (-)
G444653 NA other downstream 445353 371520 ~ 373464 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012092 pcgf5a coding NC_007128.7 CM002901.2 23434211 ~ 23446760 (-)