CI01000313_00311563_00321609


Basic Information

Item Value
gene id CI01000313_00311563_00321609
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 311472 ~ 321609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000313_00311563_00321609.mRNA
ATGGGAATTCAAGGCCTGTTGCAGTTTATCAAAGACGCTTCGGAGCCCATAAATGTGAAGAAGTATCGAGGACAGACAGTGGCGGTAGACACATACTGCTGGCTGCATAAAGGAGCTTTTTCATGTGCAGAGAAACTTGCAAAAGGGGAACCTACAGATCAGTATGTGTCCTACTGTATGAAGTTTGTGGACATGCTGCTTTCTTTTGGAGTTAAGCCCATCTTGGTTTTTGACGGACGCAACTTGCCCTCCAAACAGGATGTGGAGAAGTCCCGGCGCGAGCGTAGACAGGCAAATCTGCAGAAAGGCAAACAGTTGCTGCGGGAGGGTAAGATATCGGAAGCCAGAGAATGCTTTACTCGCAGTGTTAATATCACCCCGTCCATGGCACATGATGTCATTAAGGCCGCCAGGACACGTGGAGTGGACTGTGTTGTTGCTCCATATGAAGCAGACGCCCAGTTAGCTTTCCTGAATAAATCTGGTATCGCTCAGGCAGTGATCACAGAGGACTCAGATCTGCTGGCATTTGGCTGCAAAAAGGTGATTTTAAAGATGGATAAACAGGGTAATGGATTGGAGATTGACCAATGTCACCTGGGCCGTTGCAAGTCACTTGGCAACATCTTCACAGAGGAGAAGTTCCGGTACATGTGCATCCTCTCTGGCTGCGACTATCTGCCTTCTTTGTATGGCATCGGTCTGGGAAAGGCATGCAAGCTTCTCAGGATGGCAAATAACCCAGATATTCTGAAGGTGATAAAAAAGATGGGTCAGTACCTGAAGATGGACATCTCTGTGCCAAATGAGTACATTGAGGGTTTCACAAAAGCCAACAACACATTTCTGTATCAGCTGGTCTTTGACCCCTTGAGGAGGAAGGTGGTTCCTTTGAACCCTTACCCAGATCATATTGACCCTGCTTCTCTCAGCTATGCTGGAACTAATGTAGGAGATGAGAGTGGGCTGGAAATGGCTCTTGGGAATCTGGACATTAACACAATGCAAAGGATAGATGATTTCAACCCTGACGCACCTCACATTCAGGGCAAAGAGAGGGTCATCAGTGTGCGGAGTCTAAAATTGCCCCAGAGGACATCACAGGTGAAAAGACCCCATGAAGATGCAAGTCTCTCTGTGGACGACCTGTTAGGGCAGTACTCAGCTGGTGTAAAGAGACGCTGTCCTGAAACTCCTCCCGCTGCTGAGCCACTGACCACCCACACTAGTGTTTCTGAGGTGAAGGGCAGCACAGCTGGACAGTCTCGCCCTCGAAATCGCTTTGCAACACTGTTGCAGTGGAGGAACCGATCAGAAGAGGGCGCTGGAGAGCAGGGGACACGCAGCAGGTTCTTCTGTCATGATGAATCCAATAAGGCTGAGACACAGCAAGACTCGCCAAAACAAGATTCACCTCAGCCTGTGGAGTCTCTAGAGATGAGTGCCTCACAATTTGGAGAAGACACACCAGCATTGTGTCAGGACCCTGACTCAGAGAGAGATCAGGCCAAAGATGAGTTGTCCAGCCCACCTGCATCTCCGTCTCGCTCTGCCAGGCCTGCTAGTTTGGGTCTTGGAGTCTTTAGCTGGTCAGGAAGCACCAGAGAACTCAGTAAATCTGCTTCACATCCACCCACTGTCAACACAGACAGACACCGGTCATCCTCCACACCTTCAGGGTTGTCCACCCTGCAGCAGTTTCACAAAAAGAAGGGCAGCTTCTCCTGTGCAGGATCTGGGCTTTCTCTCTCATCCTCTCCTATAGAGGGCACAGATGATGCAGAGAAATCTCCTGGGTCTCCTCCGTCTCAGGACAGTGCATATTTCTCCCAGTCCAGCAGCATCTCTGCTGGTGTGGAGGACTCCCTAGTCACAGAGGACAACTCTGATAAGGTCTCAGGTTTGTCCCGGAAACGTCCTTGTGGGCAGGGTAAAAACTATAAAATTGAGACCTCTGCTCCTGCCAGGCCCAGCGGTCTCAGAAAGAAACTGAGTGGGAAAAAAAATCCTGTCAACAATGAGAACAGTCCAGGCCTGCAGGCCACCATCAGCAGCCTCTGGGGGGCCTTCAGCTTCAAGAAGGACAATCCAAAGTTAAGTGCATGCAAGAAAGGAGAACCGATGTCACCAGTCAGGGAGAATGTGATGACTGAAACCACTGAAGCAGATAAAGAGATTCTCATCATCGCAGAATGATGTCATCTTTTCAATCATTGTTTCTCTTAAGAGTAACAGCCAGTCTTTTGAACATACTGTGTATGTTTATGCTTTTTTTATGATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000313_00311563_00321609.mRNA True 2287 mRNA 0.49 12 311472 321609

Neighbor

gene id symbol gene type direction distance location
CI01000313_00294667_00301218 NA coding downstream 10254 294104 ~ 301218 (-)
CI01000313_00117452_00118526 NA coding downstream 192946 116594 ~ 118526 (-)
CI01000313_00028124_00047785 MRPS5 coding downstream 263687 27846 ~ 47785 (-)
CI01000313_00016648_00018929 NA coding downstream 292065 16370 ~ 19407 (-)
CI01000313_00698894_00703473 FAM98A coding upstream 377285 698894 ~ 703473 (-)
CI01000313_00713063_00727810 NA coding upstream 391397 713006 ~ 727810 (-)
CI01000313_00819117_00821323 PCGF5A coding upstream 497208 818817 ~ 821474 (-)
CI01000313_00822941_00823338 NA coding upstream 500850 822459 ~ 823338 (-)
CI01000313_00897217_00899112 NA coding upstream 574390 895999 ~ 899207 (-)
G444605 NA non-coding downstream 51258 255617 ~ 260214 (-)
G444617 NA non-coding downstream 109282 182864 ~ 202190 (-)
G444612 NA non-coding downstream 135188 175166 ~ 176284 (-)
G444606 NA non-coding downstream 140798 168851 ~ 170674 (-)
G444592 NA non-coding downstream 181008 128624 ~ 130464 (-)
G444692 NA non-coding upstream 1720 323329 ~ 324295 (-)
G444656 NA non-coding upstream 17759 339368 ~ 356049 (-)
G444658 NA non-coding upstream 23948 345557 ~ 350841 (-)
G444740 NA non-coding upstream 108866 430475 ~ 430722 (-)
G444741 NA non-coding upstream 109783 431392 ~ 431624 (-)
G444653 NA other upstream 49911 371520 ~ 373464 (-)
G444714 NA other upstream 75998 397607 ~ 400096 (-)
CI01000313_00982839_00997272 NA other upstream 665405 982829 ~ 997590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001806 LOC107744706,LOC107081139 coding CM030143.1 CM030143.1 16123040 ~ 16130281 (+)