CI01000313_00294667_00301218


Basic Information

Item Value
gene id CI01000313_00294667_00301218
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 294104 ~ 301218 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000313_00294667_00301218.mRNA
AGAGGATGACAGTCAAAATCACCAGGAGTTTAGAGGTGTCAACACCAGCGGCTACAGAAACACTCACATGAACGACTTTGGTCCATCCATTCCTGAAGCATTCCTGACAAAAATCACACAAACACATACACAATCTGTTAAAGAGACAGAATACCAGAATGGAGAAACAAAGATTTTAACTTCGGAGGACACAGAGAAAGGAGGGGCCGTAGTCACAGGAATCAAAAATCCTGCAATTAAAGTGCAGGAAGGAAATCAGTTTGTTTCTGCAACAATTCATCTGGACCACCTCAGTGAAGAGGATGTGCTAGAACTGATCAGAATCATTAAGCCCTATGACAACAACCTTGAACTTAAGACAACAAAAGACCTAAAAGCAGGAGTGTCCCTTGGTGATCTCCGATTGAACTGTGAGGCAGGACTTCAAGCACCGGGTGTTCAGGTTAATGGGCTAAATGGACAGATAAATGCCCCAAGTCTCAAGGGTGGCATCTCAACCCCAACAGTAAATGCAGAAATGCCACAGATGGAGCTAAAGGATGCCACACCAAACTTCAGCCGCCCAGGGTTCAAAAAGCCAACTTTTGGCATGTCTGCACCAAATCTCGAAGGAGCAGGTCTGGATGGCACATTAGAAGCACCTGATGTCAGTGTCTCCACCCCTAGTCTAAACACTCTGGATGTTTCTGTTAATGTGGATAAACCTGAATTGAAGACAAAAACGTCTAAGTTCAAAATGCCCAACTTCAGTTTACCAGCTAAAAAACCAAAGGTTAATGGTAATGTGAATTTAACCACCCCAGACATAAACGCTGACCTAAAAACCCCCGATCTAAGTCTGTCAGCCCCAAAGATTAATGGAGAATTTAACACCCCTGAAGTAGACATGACCTTGCCAACAACTGAGCTCAGTGGTCCAAACCTGGACATTGAAACACCAAAAGTGAATATTGAACCTCCTTCTAACAAGTTTAAATTTCCAAAATTAAAGAAAGCAAAAACTACAAAAGTTAAAGTACCAGAGGCGACTGTTGATGCAAATCTAAATGCACCAAATCTTGCACTTTCTGTCCCGAAATTAAATGCAGATGTCAGTGCACCAAATGTTGACATTGATCTGCCAAGAGCCAATCTTGAAGCTCCAGACATAGATATTCAGACTCCTGATGTCAATATAGGTGCTCCCTCTGGCCAAATTGATGTTCATGCTCCATCTGCAAAGCACAAGTTCCCAACTCTTAAAATGCCAAAGCTAAGCTCAAATAAATCAAAGCTGAAAACTCCAGATCTAAATGCAGGGATACAAGCACCAGACATGAACATGTCAGCTCCTAGGGTAGATATGAATCTGCCAAAAGCTGAACTGGAAGGACCTAATCTAGATGTCAAGGCACCAAACCTCAACCTCTCTGCACCAGATCTAGACATTAAAACTCCAGCTGTTGATGTGCAGGCACCAGATATTGACATAGAAGCTCCATCTGGAAAGCTAAAGAAGCCGCATGTTAAACTGCCTAAATTAAATATATCTGGGTCAAAAATTAAAGGTCCAGATGTAGACCTCAATGCACAGGGAGATCTCCAAGCACCAAACCTCAACCTCTCTGCACCGGATCTAGACATTAAAACTCCAGCTGTTGATGTGCAGGCACCAGATATTGACATAGAAGCTCCATCTGGAAAGCTAAAGAAGCCGCATGTTAAACTGCCTAAATTAAATATATCTGGGTCAAAAATTAAAGGTCCAGATGTAGACCTCAAGGCACAGGGAGATCTCCAAGCACCGGACCTAGACCTAAAAGCTCCAGATCTCAGTCTTTCAGCACCCAAAGTGGAAGGCAAATTAACTGGTCCAGATGTGAATCTGAACTTGCCAGATGCTAATATCAAAAGTCCAAATGTAGATCTCAAAGCTCCAGACACTGACTTAAATGCTCCTAAAATAGACATTGATGCCCCCTCCGGCAAAGTCAAGCTACCTCACTTGAAGTTTCCCAAGTTTGGTCTTTCTGGACCTCGGGTTAAAACGCCAAAATTAGATGCACCTGATGTAGATGTGAACATCCCTACAGCAGAACTCAAAGGACCTAATGTAGATGTTAAAACACCTGATCTTAGTCTTTCCATGCCTAAAGTTGAAGGTGACATTTCTGCTCCCTCTTTAGACATTGATTTGCCAAAAGCTGACTTAAAAGCTCCAACTGTGAATATTGGGGGAAAGTCACCAAATCTCTCCACTCCAGATGTAGACATAAACTTGCCAAAAGCAGAGCTTGAAGGACCTGATGCGAACCTAAAAGTCCCAGATGTTGACATTAATGCTACATCTGGAAAATTTAAGATGCCACATTTCAATTTGCCAAAACTGAATCTGTCTGAGCCAAAAGTAAAAGGGCCTGAGCTGGATGCTAATGCAGATCTAGATCTCTCAGCTCCCAAACTTGAAGGAGAATTAACTGACCTAAATCTTCCCAAAGCTGAGATCAGTGTGCCTGATGTGAATGCAACTTTACCAAAAGCTGAAGTCAGTGTCCCCAGTGTAGATGTCAGTTCCCCAGATTTAAAGGCTCCATCTGGAAAGCTCAAACCGATTACGTTTAAGAAAACAAAAGTTGACCTTTCCAGTCTAAAAGTGAAGAGTCCTGGGATTGATTTAAATGCAGAAGCTCCTGATCTCAGCCTCTCAGCTCCAACAGTTGATACAGATGTCAAAGTGCCAGATGCTGATATAAAGCTTCCCACAGCAGATGTTGACATCAATGCTCCCAAAGGAAAGATAAAATTCCCAACATTCAAAAAGTTTCACCTGTCTGGTCCAAAAGTCAAATCTCCTGATGTTGACATTGCTGCTGATGTAAGTGGACCAGATCTAAACCTATCTGCACCTGAGGTCGGTAGTCCTGATGTTAACGTGAGTCTTCCCAATGCTGGGCTTGATGTAGATGTTCCCACTGCTGATGTTGACATCAATGCTCCCAAAGGAAAGATGAAATTCCCAACATTAAAAAAGTTTCACCTGTCTGGTCCAAAAGTCAAATCTCCTGATGTTGACATTGCTGCTGATGTAAGTGGACCAGATCTAAACCTGTCTGCACCTGAGGTTGGTAGTCCTGATGTTAATGTGAGTCTTCCCAATGCTGGGGTTGATGTAGATGTTCCCACAGCAGACGTTGACATCAATGCTCCCAAAGGAAAGATGAAATTCCCAACATTGAAAAAGTTTAACCTGTCTGGCCCAAAAGTCAAATCTCCTGATGTTGACATTGCTGCTGATGTAAGTGGACCAGATCTAAACGTGTCTGCACCTGAGGTTGGTAGTCCTGATGTTAACGTGAGTCTTCCCAATGCTGGGCTTGATGTAGATGTTCCCACAGCAGACGTTGACATGAATGCTCCCAAAGGAAAGATGAAATTCCCAACATTCAAAAAGTTTAACCTGTCTGGCCCAAAAGTCAAATCTCCTGATGTTGACATTGCTGCTGATGTAAGTGGACCAGATGTGAACCTATCTGCACCTGGGGTTAGTGGTCCTGATGTTGACTTGAGTCTACCAAATGCTGGGGTTGATGTAGATGTTCCAGGCATCAATGCTGAAGCTGAGGGCTCCAAGCGTCGGTCAAAATGGCCCTTCAAATGGCGCAAATCTGCTGAATCAAAGGATATGGATATTAACAGTAAAGTACCAGAAGTAGATGGTACCACTTCAGAAATAAAACTCCCCAAAAATATACCCGTCTTCAAGACTCACAGTTTGCCTGCCAGCAACATTGACATTATCTTGCAAGAACGCAGTGGAGCGGTTAACCTCAGTACTGACCCAACGAAAACAATAACTGACACGGCTATCTCTGTCTCACCAATCAAGAAAAATCTGAAAGTTTCATCTCCATCTGTTGGAGTCAATGGACAGACAGTCGCTATAGATGTCCAGGAAAGGCTGAGGTTGTCTAACGCACGTACCACAAGCCCAGATTTCGACATATCTTCAGAACCAGGCAGCCCTACAAAAGTGAACAGAGGAACATTTAAAGTCACAAAGCCTGATGCTGAAAGGGACTATCCGGTAGTTGATACTACTAGCAAGGAAGATGATGCCAAGATGAACCTCAGCTTGAACAACATGCTTTGTTTGACAACAGATTAAAGCTCAAGTAAAACCAGAAGCCTTGTTAGTGTGGTTCCACATCCATTGCATATAGTTAATGCATATGTATAATATGTATAAGAAAAAAAAAGAAAAAAAAAAGTATTCCTAACAGTTTACTGTAAAAGCGGAGGAGTACTGATGGAGAAGCATTATAGAATTTGACAGATGTATTATTTTTTTATTCAGTTAAACACATAATTGTATAATAATCTCTTTAAATGTTTAATGATTGTATTGTCTCAAAATGTAAACAAGAACATGAAGGAAAATACACTCATCTGTAATCTATAATTATGTCTATTTTGCCAGTTTTTTTTTAGTAATATATATATATATATATATATATATAAAATTGTCTTTTGTTTATACTTTTTCCATACCAGTTTTATAATTGTATTCATCAGTATTGCAAATGAAAAAACAACAACAACTACACAACAAAAAGTCCAATTCTTACACCTATTAAAAACCAAATATATGTGTGGCTTTCTGTCTGTTTCATAAAGCATGTGTCCATTATGTTTGCATAAGGCACAAATCTCTTAAAATACTTTAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000313_00294667_00301218.mRNA True 4707 mRNA 0.41 5 294104 301218

Neighbor

gene id symbol gene type direction distance location
CI01000313_00117452_00118526 NA coding downstream 175578 116594 ~ 118526 (-)
CI01000313_00028124_00047785 MRPS5 coding downstream 246319 27846 ~ 47785 (-)
CI01000313_00016648_00018929 NA coding downstream 274697 16370 ~ 19407 (-)
CI01000313_00311563_00321609 NA coding upstream 10254 311472 ~ 321609 (-)
CI01000313_00698894_00703473 FAM98A coding upstream 397676 698894 ~ 703473 (-)
CI01000313_00713063_00727810 NA coding upstream 411788 713006 ~ 727810 (-)
CI01000313_00819117_00821323 PCGF5A coding upstream 517599 818817 ~ 821474 (-)
CI01000313_00822941_00823338 NA coding upstream 521241 822459 ~ 823338 (-)
G444605 NA non-coding downstream 33890 255617 ~ 260214 (-)
G444617 NA non-coding downstream 91914 182864 ~ 202190 (-)
G444612 NA non-coding downstream 117820 175166 ~ 176284 (-)
G444606 NA non-coding downstream 123430 168851 ~ 170674 (-)
G444592 NA non-coding downstream 163640 128624 ~ 130464 (-)
G444692 NA non-coding upstream 22111 323329 ~ 324295 (-)
G444656 NA non-coding upstream 38150 339368 ~ 356049 (-)
G444658 NA non-coding upstream 44339 345557 ~ 350841 (-)
G444740 NA non-coding upstream 129257 430475 ~ 430722 (-)
G444741 NA non-coding upstream 130174 431392 ~ 431624 (-)
G444653 NA other upstream 70302 371520 ~ 373464 (-)
G444714 NA other upstream 96389 397607 ~ 400096 (-)
CI01000313_00982839_00997272 NA other upstream 685796 982829 ~ 997590 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012084 si:ch211-125o16.4 coding NC_007128.7 CM002901.2 22544648 ~ 22552678 (-)