XLOC_012084 (si:ch211-125o16.4)


Basic Information

Item Value
gene id XLOC_012084
gene name si:ch211-125o16.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22544648 ~ 22552678 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023831
TTTCACTCGGAGTTTAGAAGCGTAAACATCAGCGGCTACTACATGAACTACACCAGCAGATATCCTGAAAACTGGTTTTCATGACATGTCCGGTTGTATTTAAAGCAGTGACGCCATGATGAATGGAGAAACAAATATCCGTGTGCACTCAGACGGTGTAAAATTGGACGATGCAGTGAAAGGAGGAGTTGGAGTCGGGGTCAAAGGAATCACAAGTCCTGCTATTACCCAGGGAGAAGGAGATAAGCTTCTTGCAGCAACAGTTCATCTGGACCACCTTAGTAAAGAGGATGCACTACAACTGATCGGTATCATCAAGTCATACGACAAGAACCTTGAACTTAAGACATCAAAAGATCTGAAAGCAGGAGTGTCCCTTGGTGACCTTCGATTGAACAGTGATGCAGGACTTGAAGCACCCGGTGTTAAGGTTAACGGgttaaatggacaaataaatgcCCCAAGTCTTAAGGGTGGCATCTCAACCCCAAATATCAGAGGAGCAGGTCTGGATGGCATGTTAGGAACACAGGATGTCAGCCTTTCTACACCTAGACTACACACTCCTGGTGTCTCTGTTAACGTGGATAACCCTGAACTGAAGACCAAAACACCCAAGTTCCAAATGCCCGACTTCGACCAACAGGCTATGAAACCAAAGATTGGTGGTGATGTGAATTTAACAGCCCCAAAGGTAAATGCTGACCTAAAAAAACCCGATCTGAGTCCATCAGGACCCAAGATTAATGGAGAATTTAACACCCCTGGAGTAGATGTGACCTTGCCAAAAACTGAGCTCACCGGTCCAAATATGGACATCGACACGCCAAAAGTTAATACCTCTGGCAAGATGAAATTTCccaaatttaagaaaaaaactgctaAAGTAAAAGTACCGGAGGCAAGTATTGATGCAAATCTAAACAAACCAAATCTAGAACTTTCTGCCCCAAAGTTAAATGCAGGTGTCAATCTGCCAAGGGCAGATCTTGAAGCACCAGATGTAGACATCAAAACTCCAGATATCAACATAGGAGCTCCCAAGGGCAAAGCTAAATTTAAAACCTTAAAGAAGCCCACATTTGGGCATAAGGTTAAAGCACCAGAGGCTGGCTTAGATGTCAGTGCCTCAAAACCTGATTTGAATCTGTCAGCACCAAACATAGATGGAGATATCAGCATCCCAAACACACGTGTCAATTTGCCCAAGGCTGATGTGGATGTAAAAGCACCTAATGTAGATATTCATACTTCGTCTACAAAGCCCAAGTTCCCAACTCTCAAAATGCCAAAGATAAACTTGCATAAATCAAAGGTGAAAACACCTGACTTAAATGCAGACTTGAACATGTCATCTCCAGAGGTAGAAATGAACCTGCCAAAAGCTAAACTGGATGCACCAAATCTAGATGTCAAAGCTCCAAATCTCAACTTGTCTGCACCAAATCTAGACATTCAAACTCCAGGAGCTCATGTGCAAGCACCAGATATTGACATTGAAGCTCCATCTGCAAAGGTAAAGAAGCCCCATGTTAAAATGCCCAAATGGAGTCTTTCTGGACCAAAAATGAAAGGAAAAGCTGATTTAGATGTACCGGATCTAGATGTCAAAGCCCCAGACCTAAATCTCACTACACCAAATCTCGATGTCAAAGCTCCAGACCTCAACCTCTCTGCACCCAATCTAGACATTGAAACTCCAGGAGCTCATGTGCAGGCGCCAGATATTGACATTGAAGCTCCATCTGCAAAGATAAAGAAGCCCCATGTTAAAATGCCTAAACTGAATCTTTCTGGGCCAAAAATAAAAGGAAACGCTGATTTGGATGCACCAGATCTAGATGTCAAAGCCCCAGACCTAAACCTCACTGCACCAAATCTAAATGTTCAAACTCCAGGAGCGCATGTGGAGGTACCAGATATTGACATTGAAGCTCCATCTGCGAAATTAAAGAAACCTACTGTTAATATGCCTAAAATAAATCTATCTGGGCCAAAAATTAAAGGAAAACCTGATTTGGATGTACCGAATCTAGATGTCAAATCTCCAGACCTCAACCTCTCTGCACCGAATTTAGACATTCAAACTCCAGGAGCGCATGTGCAGGCACCAGATATTGACATTGAAGCTCCATCTGCAAAGATAAAGAAGCCCCATGTTAAACTGCCTAAATTTAATCTTTCTGGGccaaaaataaaaggaaatgcTGATTTGGATGCACCAGATCTAGATGTAAAAGCACCAGACCTCAACCTCTCTGCACCAAATCTAGATGTTCAAACACCAGGAGCGCATGTGGAGGTGCCAGATATTGACATTGAAGCTCCATCTGCAAAAGTAAAGAAGCCCCATTTTAATCTGCCTAAAATGAATCTATCTGGGCCAAAAATTAAAGGAAAACCTGATCTGGATGCACCGAATTTAGATGTCAATGCTCCTGACCTCAACCTCTCAGCACCAAATCTAGACATTAAAACCCCAGGTGTGGATGTGCAGGCACCAGATATTGACATTGAAGCTCCATCTGCAAAGATAAAGAAGCCCCATGTTAAACTGCCTAAATTTAATCTTTCTGGGCCAAAAATAAAAGGAAACGCTGATTTGGATGCACCAGATCTAGATGTAAAAACACCAGACCTCAACCTCTCTGCACCAAATCTAGATGTTCAAACACCAGGAGCGCATGTGGAGGTACCAGATATTGACATTGAAGCTCCATCTGCAAAAGTAAAGAAGCCCCATTTTAATCTGCCTAAAATTAATCTGCCTGGGCCAAAAATTAAAGGAAAACCTGATCTGGATGCACCGAATTTAGATGTCAATGCTCCTGAACTCAACCTCTCTGCACCAAATCTAGACATTAAAACCCCAGGTGTGGATGTGCAGGCACCAGATATTGACATTGAAACTCCATCTGCAATGGTATACAAGCCCCATGTTAATCTGCCTAAAATAAATCTATCTGGGCCAAAAGTGAAAGGAAAACCTGATTTGGATGCACCTACTCTAGATGTCAATGCTCCAGACCTCAACCTCTCTGCACCAGGTGTTGATGTGCAGGCACCGGAAATTGACATTGAAGCCCCATCTGCAAAGATAAAGAAACCCTTCATTAATCTACCTAAAGTAAATTTAAAAGGGGCAAAAATGAAAGGTCCAGATATAGACCTCAATACACAGGCAGACCTCCAAGGACCAGACATAGACCTGAAAGCTCCAAATCTCAATCTTTCAGCACCCAAAGTGAACCTGCCAGATGCCAATATAAAAAGTCCAAATGTAGACCTCGAAACCCCAGGCATTGACTTAAATGTTCCTGAAGTAGATATTGATGCCCCCTCTGGGAAAGTCAAGATACCGCACTATAAGATGCCGAAATTTGGTCTTTCTGGGCCTCGTGTTAAAACAGAAAAAGTAGAAGTACCTGATGTAGATTTGAACATCCCCAAAGCAGAACTGAAAGGACTTAATGCAGGTGTTAAATCACCTGATCTTAGTCTTTCCACACCTAAAATTAAAGGGGACATTTCTGCTCCTTCTTTAAACGTTGGTTTGCCAGACGCTGATTTAAAAGCTCCAACTGCAAACATTGGGGGAAGTCTAGAGTCACCAAATCTCAATATATCCAAACCAAATGTAGACCTAAATTTACCCAAAGCAGAGTTTCAAGGACCTGATGCTAACCTTAAAGTCCCAGATGTTGATATCAATGCCCCTTCTGCAAAACCTAAGATGCCACATTTCAAACTGCCAAAATTGAATCTGTCTGCGCAAAAGATGAAAGGGCCCGAGCTGGATGCTAATACAGATCTAAGTCTTTCCGCTCCCAAACTTGAAGGAGAATTAAAAACACCTGCTGTTGACCTAAATCTTCCAAAAGCTGATGTAAATGCAACTTTACCAAAAGCTGAGGTCAGTGTTCCCAATGTAGATATCAAGTCCCCTGACTTGGAGTCGCCGTCTGTAAAGCTAAAACAGCTTAAAATTAAGAAACCAAAAGCCGACCTTTCGGTTCCAAAAGTGCAGACTTCAGGTATTGACATAAATGCAGAAGCTCCTGATCTTAACCTCTCTGCTCCAAAAATTGGTACTCCTGATGCTGACTTGAGCCTGCCCAATGCTGGGGTTGATGTAGATGTTCCCACACTAGATGCTGACGTCAAGGTTCCCAAAGGAAAACTAAAATTCCCAACAATGAGGAAATTGAACTTTTCTGGCCCCAAAGTTAAATCTCCTGATGTTGACATTGCTGCTGATGTAAGCAGGCCAGACCTGAACCTATCTCCTCCTGGTGTGGATGTGAATCTTCCCAATACTGGGGTTGATGTAGATGTCCCAAGCATTAATGCTGAAGTCGAGGGCTCCAAAAGCAAGAAGAAATGGCCTTTCAACTGGCGAAGATCTGTTGAATCAAAGGATGGGAATGTAAAGATTAAAGCACCAGAAGTAGATGGCAACACAGAAATAAAACTCCCCAAAAATATCCCCTTGTTCAAGACTCACAGCTTACCTGCAAGCAACATTGACAGCATCTTGCAAGAACGCATTGGAGCAGCTGACGTCACTATTGACCCTGCTAAAACAATAACTGATGCAGTTGTCTCAGTCTCGTCAGTCAAGACAAATCTGAAAGCTTCATCTCCATCTGTTGGGGTCAATGGACAGAGAGGcagtgtagatgtcctggagagGTTGAGATTGTCTAATGCACGTACGATTAGCCAAGATTGCGGCATATCTTCAGAACCAGGCAGCCCTCCAAAAGCGAATAGAGGAACATTTAAAGTCACCAACCCTGATGCTAATAAGGATCATCCAGTAGTTGATACTACTAGCAATGACAAAGATGCCAAACTTAGCCTAAGCTTGAACAACATGCTTTGTCTGCAGACAGAGTAAAATTTAATCCAAGAGCATTGGTAATGCACATCACCTCAATATAGTGAAGTCATATGTAAAAATTACATGTATAAAAATGGGTAAAGTTTTGATTGAAAAGCATTCTAGAATTTGACAGatgtaattatttttgtattcaGTTCTACACAATTAAACAGTTAAATGTGCAATGAATGTATCTTAAAATACTGACATAAATATATAAGAAAATCTGCTGACTCTATAATTCTCTGCATTTTTAAGcggttaaatatatattatattgtcttTTGTTTACACTTATTTCCATTCcagttttatatgtattttgatCAGTATTGCaaactggggaaaaaaacaaacaaatcaacttGAGACTGTGTTCTCACTGTGTATCACATATATGTGCAGATTTCTGCCagtttcacacacaaaaaacctCAATAAAGCTTATATGAACAA

Function

symbol description
si:ch211-125o16.4 Predicted to be involved in regulation of RNA splicing. Predicted to be active in costamere and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 3 and Charcot-Marie-Tooth disease type 4F. Orthologous to human PRX (periaxin).

GO:

id name namespace
GO:0043484 regulation of RNA splicing biological_process
GO:0043034 costamere cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-100 Predicted to be involved in regulation of RNA splicing. Predicted to be active in costamere and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 3 and Charcot-Marie-Tooth disease type 4F. Orthologous to human PRX (periaxin).

Ensembl:

ensembl_id ENSDARG00000056836

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023831 True 5341 mRNA 0.42 5 22544648 22552678

Neighbor

gene id symbol gene type direction distance location
XLOC_012083 BX511218.1 coding downstream 18903 22521636 ~ 22525745 (-)
XLOC_012082 NA coding downstream 40264 22484805 ~ 22504384 (-)
XLOC_012081 CU104709.1 coding downstream 219921 22319080 ~ 22324727 (-)
XLOC_012080 mrps5 coding downstream 407449 22107702 ~ 22137199 (-)
XLOC_012079 ttbk1b coding downstream 477197 22032296 ~ 22067451 (-)
XLOC_012085 exo1 coding upstream 11158 22563836 ~ 22573402 (-)
XLOC_012086 NA coding upstream 134492 22687170 ~ 22689787 (-)
XLOC_012087 BX548077.1 coding upstream 233496 22786174 ~ 22786291 (-)
XLOC_012088 BX511309.1 coding upstream 372531 22925209 ~ 22925337 (-)
XLOC_012089 fam98a coding upstream 660049 23212727 ~ 23221504 (-)
XLOC_012073 NA non-coding downstream 680466 21863655 ~ 21864182 (-)
XLOC_012063 NA non-coding downstream 1324169 21213422 ~ 21220479 (-)
XLOC_012061 AL929290.1 non-coding downstream 1414271 21130261 ~ 21130377 (-)
XLOC_012093 NA non-coding upstream 930381 23483059 ~ 23485336 (-)
XLOC_012099 NA non-coding upstream 1097856 23650534 ~ 23674495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_00294667_00301218 NA coding CI01000313 null 294104 ~ 301218 (-)