XLOC_012093


Basic Information

Item Value
gene id XLOC_012093
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23483059 ~ 23485336 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024896
tagatCAGACTCTTCTGTAGTGCTGAAAGCTGAGTTTCCTTTAAAGTTAGAGCATTCTCTCTCAGTGCAAGTTCAGCCTCCTTTCCAGACAGCATGAGGTGTGTTTGGTTATCTCTCTCTTTACTTTTAAATCCAAGAGTGTTAGGGTTTGTCAGCCCCACCTCCTTATCTTCAAGCCCCTCCTTCTCCTTCTGAAGGCATGTAATCTTCTCCTCAAGTTCGGCTTTGACCTTACATAAGCTCGTGACCTCAGCTTGCAGTTCAGAGTTGAGTTTTTTGAGATTTTCATAGTCAGATGTGTGTTCTGCTTTCTGTCTCATTAGCGCAATTTCCTTTTCAAGAGTCAAGATGTGTTTGTTCTTTTCTCTCAGTTCAAGATCTCGCTTAGCCATTAGTGATTTAGCAGCAAACGCACCTGTAGTGTTGCTACATCTGGATGCAACTGCTACGTTCAGATTGCTAAAATCCACAGCCGTTGCCATCTGTTTGCTTTCCAATGTTGTCTGACAAACGTCTTCTTTCAGAATATGTTCCTGTGACACTCTTTCATCCAGATTTGACTTTTGATCCTGAATGCACACTTGTAATCTGTGGCATTCCTGCTCAAGGTCTGTGATCTGCTTGTCTTTTTGTTTGGCTTCAGCAAGGCAACACTCCAGCTGACCTTTGACCTCATGAAGGGCGGAGTCTTCCCGCCCATCATCTGCTTCATCTTCAGGCATTTTCAAGTCCTCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024896 True 736 lncRNA 0.44 2 23483059 23485336

Neighbor

gene id symbol gene type direction distance location
XLOC_012092 pcgf5a coding downstream 36299 23434211 ~ 23446760 (-)
XLOC_012091 si:ch211-149k12.3 coding downstream 66162 23411202 ~ 23416897 (-)
XLOC_012090 AL935174.3 coding downstream 241666 23237239 ~ 23241393 (-)
XLOC_012089 fam98a coding downstream 261555 23212727 ~ 23221504 (-)
XLOC_012088 BX511309.1 coding downstream 557722 22925209 ~ 22925337 (-)
XLOC_012094 htr7a coding upstream 56779 23542115 ~ 23545716 (-)
XLOC_012095 ifit16 coding upstream 112869 23598205 ~ 23603263 (-)
XLOC_012096 ifit15 coding upstream 121859 23607195 ~ 23609210 (-)
XLOC_012097 ifit14 coding upstream 127280 23612616 ~ 23616626 (-)
XLOC_012098 fas coding upstream 134588 23619924 ~ 23631411 (-)
XLOC_012087 BX548077.1 non-coding downstream 696768 22786174 ~ 22786291 (-)
XLOC_012086 NA non-coding downstream 793272 22687170 ~ 22689787 (-)
XLOC_012083 BX511218.1 non-coding downstream 957314 22521636 ~ 22525745 (-)
XLOC_012082 NA non-coding downstream 978675 22484805 ~ 22504384 (-)
XLOC_012099 NA non-coding upstream 165198 23650534 ~ 23674495 (-)
XLOC_012103 NA non-coding upstream 500537 23985873 ~ 23987510 (-)
XLOC_012104 NA non-coding upstream 537971 24023307 ~ 24026857 (-)
XLOC_012105 NA non-coding upstream 718363 24203699 ~ 24219682 (-)
XLOC_012106 NA non-coding upstream 811014 24296350 ~ 24301689 (-)

Expression


Co-expression Network