XLOC_012092 (pcgf5a)


Basic Information

Item Value
gene id XLOC_012092
gene name pcgf5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23434211 ~ 23446760 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023845
GAGTTTACCAGCCACGCACTGCCTGCACGCGCTCCATCCACCGCCGGGCTGCAGCGATGTGACTCTCTCCGGTTCTCACTACCCCCTTCCACGGTCTCCATTACCGAACCGGCGCAGTGAGGCGAGGGGATTCGTAACGAGTCACTCTCTCAACAATAATGTCTTCAAATCGAAGTTATAACTGCCTCAAAAAGGAGGCGATAATGAAATCGCTGGCGCACAGGCAGCGCAGTGAGTCCAGCTTGTGATCTTCTGACCTCTGTGGACCCTTGAGTCGAGATGGCGACCCACCGAAAGCATCTGGTCCGAGATTTCAACAGATACATCACTTGCTCCATTTGCCGTGGGTACTTGATCAAGCCCACAGCTGTCACAGAATGCCTGCACACCTTTTGTAAGAGCTGTATCGTTCAGCATTTTGAGGAGAGTAATGAGTGTCCTGAATGTGGGATACAAGTCCACGAAACAAATCCTTTAGAGATGCTGAGGCTAGATAAGACCCTAGAGGAGATCATCTTTAAACTGGTGCCTGGACTAAGAGAAAAGGAGGAACATCAGGAAAGTGAATTTTGGAGAAAACACAAGATCAAATCAAATGGAGAAGATGGTCCTAGAGCTAAGAAATCTCGACTGAGTGGTGAAGATGATGATGGGAATGGTGGAGACTACCACAGGAGTGATCCTCAGATTGCTATTTGTCTGGACTGTCTAAGAAACAATGGCCAGTCAGGAGAAAGCATAGTTAAGGGTTTAATGAAGAAATTCATCCGCTGCTCCACCCGTGTTACAGTGGGAACCATTAAGAAGTTCCTCTGTGTAAAGTTGAAGCTGCCAAGCTCTTATGAGCTTGATGTTTTGTGTAACGGTGAGATTATGGGTAAAGATCACACCCTGGAGTTCATCTACCGAACTCGCTGGAGACTTCAAGGGGACAGTGCTTATCCCATGGTTCTCGAGTACCGTCCAAGGATCGACTTTGGCTAAACCACACTTACAGCTTACAGCAGAAATCTCATGCAGACTGATGTCAAGAGATGAACTAAATGCAGAAAAACTGAATGATTGTGCCTCCGTTGAAAGACAACAACACAATGCCCGGTGACTGACAGGACTGCTCTGTTCCTTCTGTGCACTCAGCCTTTAATTCTCCGTTCCTCCCTCCTTCA

Function

symbol description
pcgf5a Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-33 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Is expressed in eye; gonad; and muscle. Orthologous to human PCGF5 (polycomb group ring finger 5).

Ensembl:

ensembl_id ENSDARG00000071007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023845 True 1166 mRNA 0.48 9 23434211 23446760

Neighbor

gene id symbol gene type direction distance location
XLOC_012091 si:ch211-149k12.3 coding downstream 17314 23411202 ~ 23416897 (-)
XLOC_012090 AL935174.3 coding downstream 192818 23237239 ~ 23241393 (-)
XLOC_012089 fam98a coding downstream 212707 23212727 ~ 23221504 (-)
XLOC_012088 BX511309.1 coding downstream 508874 22925209 ~ 22925337 (-)
XLOC_012087 BX548077.1 coding downstream 647920 22786174 ~ 22786291 (-)
XLOC_012093 NA coding upstream 36299 23483059 ~ 23485336 (-)
XLOC_012094 htr7a coding upstream 95355 23542115 ~ 23545716 (-)
XLOC_012095 ifit16 coding upstream 151445 23598205 ~ 23603263 (-)
XLOC_012096 ifit15 coding upstream 160435 23607195 ~ 23609210 (-)
XLOC_012097 ifit14 coding upstream 165856 23612616 ~ 23616626 (-)
XLOC_012086 NA non-coding downstream 744424 22687170 ~ 22689787 (-)
XLOC_012083 BX511218.1 non-coding downstream 908466 22521636 ~ 22525745 (-)
XLOC_012082 NA non-coding downstream 929827 22484805 ~ 22504384 (-)
XLOC_012099 NA non-coding upstream 203774 23650534 ~ 23674495 (-)
XLOC_012103 NA non-coding upstream 539113 23985873 ~ 23987510 (-)
XLOC_012104 NA non-coding upstream 576547 24023307 ~ 24026857 (-)
XLOC_012105 NA non-coding upstream 756939 24203699 ~ 24219682 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_00819117_00821323 PCGF5A coding CI01000313 null 818817 ~ 821474 (-)