XLOC_012094 (htr7a)


Basic Information

Item Value
gene id XLOC_012094
gene name htr7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23542115 ~ 23545716 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023846
TCACTCATTGCGCGCGCATCTGTGATCTCGTGCCATCATTGGGAGCTCGGAAAAGTTGATGGATAAAAGGAGCACGGCATGGTGCTGGGCGATACCAACAGAACTATTATCGCGAAAAGCCACGGAGAAACTATGAAGTCCTTAATGGCTGAGGAGCGCGCGCGAGAGACAGGAGCAAGTGTGGAAACCTTTAACGGCATTATGATCTCTGAGGTCCTCGTCCCTCGCCTATTCAAGATTGCGCACGAGTCTGGAGAGGTGGCAGTGGCTGCAGGCTCCGGGTCCATGGATATGAAGCCCTCCAGCTCTCCGATCCTTCTGGAGATGATGGAGGTGGCGAACGGCACGCGCTGCGCGGAGCAGATCCTCAGCTATGGAGAGGTGGAGAAGGTGCTGATCGGTGGTGTGCTGACCATGCTCACACTCATCACCATCTGCGGGAACATGCTCGTggtcatttctgtttgtttcgTGAAGAAGCTACGACAGCCCTCTAACTATCTTATCGTGTCCCTTGCGCTCGCGGACCTCTCCGTTGCGCTCGCGGTGATGCCGTTCGTCAGTATCACGGATCTGATCGGTGGACGCTGGATTTTTGGCAAGTTTTTCTGCAACGTGTTCATAGCCATGGATGTGATGTGCTGCACCGCGTCCATCATGACACTCTGTGTTATCAGCATCGACCGATACCTTGGCATCACCAGACCCCTAACGTACCCGGTGAGGCAGAATGGCTGGTGTATGGCCAAAATGGTGCTGTCTGTGTGGTTGCTCTCTGCGTCAATCACGCTTCCACCTCTCTTCGGCTGGGCACAGAACGTCAACGATGACCGTGTGTGTCTGATCAGCCAGGACTTCGGCTACACCATTTACTCCACGGCTGTTGCGTTTTACATCCCCATGACCGTCATGCTGGTCATGTATTACCGCATCTTCCGCGCCGCCAAGCTCAGTGCTGCCAAACACACCATCACCGGCTTCCCTCGTGTGGAACAGGAAGAAGTTGAGGAAGATGAGGTGGAAGAGGATGGAGGAAATGGGGCAGAGGAACCCACAGGAGTGGATTGCGTAACTGTTGCCATCAAGCTTCAAAGGGAAGTGGAAGAGTGTGCGCGTCTGCCTCGAATCCTGCGAGGAGTGGGCAGGAGGTGCTCAGACCGTAGAAGCATCTCCATTTTCAAGCGAGAACAGAAAGCGGCGGCCACTCTTGGGATAGTAGTTGGAGCATTCACCATCTGCTGGCTGCCGTTTTTCCTGCTCTCCACGGCCCGGCCCTTCATCTGCGGGACAGAGTGTAGCTGCATCCCACTGTGGGTTGAGAGAACACTGTTGTGGCTTGGCTACGCCAACTCACTTATCAATCCTTTCATCTACGCTTTCTTTAACCGTGACCTGAGAACTACCTACCGAAGCCTCCTCAGCTGCAGATACCGCAATATTAACCGCAGACTGTCAGCCGCTGGGATGCACGAGGCCCTACGATTAGTGGAACGACCAGAGGTGGTGGTTTCTGGGTGATCTAAACTGTGCTTGTAACATACAGCGAGTTCAAAGGTTAACAATGCACAGGTTTGAACTCACAGACCTAAATGGTGGCATTTAGGATCATGTGATGTTTGGATGGTGTCATGGTGTTAACAACACAGTTGTCAAAGTGGAGAGAAAGGTGCATAAGAGTCAATGCAAATTGCGTTTTCTCATCTTGGCTGACACAGGAACACAACATCACTGACTTTTCTTTGGAAAAACTATGGAGAAAAATACATATAGCTGATGAGTCCATTCCAGACAATccaaaagaacagaaaaaaagaattaTCAGACTGAAGAAGCCTTTTCACAGTAATCAATACTGCAAGAATTAGCTATTACAAATTGTATTGATACAACAGTTGTAGAAGTGACATCACTGTAGTCTGACTGTATATGTTTACCCTGTTTAAGAAGTCCTGGaaagcctacactgtaaaaaatgctgggttccacacaatcgatttgtgttgggacaacacgaAGGAAC

Function

symbol description
htr7a Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007623 circadian rhythm biological_process
GO:0042310 vasoconstriction biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-666 Predicted to enable G protein-coupled serotonin receptor activity and neurotransmitter receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger and chemical synaptic transmission. Predicted to act upstream of or within several processes, including circadian rhythm; smooth muscle contraction; and vasoconstriction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in alcohol use disorder. Orthologous to human HTR7 (5-hydroxytryptamine receptor 7).

Ensembl:

ensembl_id ENSDARG00000056949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023846 True 2020 mRNA 0.50 2 23542115 23545716

Neighbor

gene id symbol gene type direction distance location
XLOC_012093 NA coding downstream 56779 23483059 ~ 23485336 (-)
XLOC_012092 pcgf5a coding downstream 95355 23434211 ~ 23446760 (-)
XLOC_012091 si:ch211-149k12.3 coding downstream 125218 23411202 ~ 23416897 (-)
XLOC_012090 AL935174.3 coding downstream 300722 23237239 ~ 23241393 (-)
XLOC_012089 fam98a coding downstream 320611 23212727 ~ 23221504 (-)
XLOC_012095 ifit16 coding upstream 52489 23598205 ~ 23603263 (-)
XLOC_012096 ifit15 coding upstream 61479 23607195 ~ 23609210 (-)
XLOC_012097 ifit14 coding upstream 66900 23612616 ~ 23616626 (-)
XLOC_012098 fas coding upstream 74208 23619924 ~ 23631411 (-)
XLOC_012099 NA coding upstream 104818 23650534 ~ 23674495 (-)
XLOC_012088 BX511309.1 non-coding downstream 616778 22925209 ~ 22925337 (-)
XLOC_012087 BX548077.1 non-coding downstream 755824 22786174 ~ 22786291 (-)
XLOC_012086 NA non-coding downstream 852328 22687170 ~ 22689787 (-)
XLOC_012083 BX511218.1 non-coding downstream 1016370 22521636 ~ 22525745 (-)
XLOC_012103 NA non-coding upstream 440157 23985873 ~ 23987510 (-)
XLOC_012104 NA non-coding upstream 477591 24023307 ~ 24026857 (-)
XLOC_012105 NA non-coding upstream 657983 24203699 ~ 24219682 (-)
XLOC_012106 NA non-coding upstream 750634 24296350 ~ 24301689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_00897217_00899112 NA coding CI01000313 null 895999 ~ 899207 (-)