XLOC_012095 (ifit16)


Basic Information

Item Value
gene id XLOC_012095
gene name ifit16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 23598205 ~ 23603263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023847
GTGATAGACGCCCAGGAAATCCAAGCTGGAGGAAGCCTCTTCTCAACAAGAAAAACAACTGTGCCTGTCTGGAATTACAATGAATTCTCATATGAAATGCTCTATGGAGAGGCTGGAGTGCCACTTCAATTGGGATCTGGGGTGCAACAAACATAAGTTCAAAGAGTTACAGAGGAACATGCAAGACATTGAGCCACAGGGAATCGCCTGGCTGGTCCACTATTACAACCTGCTGGGCTTCATCCAAAAGAGTCTTGGCTCTGACAGAGAGGCGCTGGAGTCCCTACAGAAAGCAGAAAGTGTGATCCAGGAGCAGGGAACAGAAGAGACTGCAGTCCGGCTGCAGGTCAACAAAGCTAACCTGGCTTGGGTCTACTTCCATTTGGGAGAGCTGGAGAAGAGCAGAGGATACCTAGAAGAGCTGGAGGAGCTTCAGAGAATTCATCCTGCTCCACCTGGATGCCCTTTACACCCTGAAGTGAGTGGAGAAAAGGGCTGGACGCTGGTGAAGTTCAACAAGTCCAAGAAGCACAAGGCCATCGATTACTTTAAGATGGCTTTAGAAGCTGAACCTGAAAGGGAGGAATGGCACAAAGGTCTTGCCTTAGCCATGAATATGGCCTTTATTGATACTGAACAAACTCCAGAGCTGAAGGCTGAGATTCTAGAGAAAGTGAAAACGGCAGCAGAGATTGACCCAAACGATCTGTTCCTTCAATCTCTCTATGTCTTAAAAAAGTCTGAGGTTAAAGGAGAAAATGTTGATGAGGAGATTCAGAGTTTGCTGGAGAAATCCATCGAAACCAGAAACCCAAGTGGCTTGtccagtattttttattattatagaaataattccacagaaaaaGGTTTTTATGAGGGAGAAAGGGTTCGAAAACATTTTCCCACTTCCACAAAAGTTCTCAAAATTGTGGCAAATTTACACAAATGGAAGGTTTACAACATGAAGGCAGACACTGAGCAACGGGAGAATTTGGCTAGGAAATCCATTGAGCTGTTTGAGGAGCTTCTCACTCATTACCCTGATCATCTCAAAGTAAAGTTAGCCCTCGCATCACTTCATCAATACGCACATAACACTGAGAAAGCAAATGAGATTTACCAGCAGCTCCTGTCAGAGATAGATGATGCCATGCCTCATCATAGACGACAGCAACTATACTATTATTACGCAAGTTTTCTATATCATTCTAGATCTAGACACTCCAGAGATTCAGTTTTCTTTTACATGAAAGCTGCAGCAGTCCCGGAAATGACAGGTCGCAGACAAAAGAGCATTAAGATTCTTGAAAAAATTATTAGCAGAGGCCGAGACCCTCGCTGTGCAGAAATTCAGCATTTTCTTGAGGGACTCGTGAGTTCTGATTAAAATGTGCTTCAGAAAAACAGCTTGTGCTTAACTGGATGCCCTGTAACCTCCAGAGCCAGTTCACTGTATGTACTTTAATAAGAACTTCATGAAGGTGAATCACGTTTTTATTGCATCTGAAAACTACAGTTTAGATACGAGacataaaatgcttttatttctaAAATGCTTACAGTATGATTGCATATTGAATAAACAACTTTGCAACTTTATATTTTGCCATTTAGATGAACTAATCCAGCTTTTTAACCCTTTCATTCATGGTGTCCACATTTGTTTAAGGTTCATTAATCATGGTAATTTTTTCCAAACCACTTGAGGGCAGTGTCAGTAGACTGTCAGCTGTATTGTCACAGTGGCTACTTTCTTGCATTCCAGTTATTCTTTCTTTGCTTGATGACATCATTAATTCAAGATGGCTGACAGTGATGGCCATGTGCTAAATGCCTCAGGCATATCTGTGAAAAACTTTTATtcaagctttaaaaaaatcagtATGTACAGTCAGTATGTACATCAGTATAAcgaatatgtttttatatgagtatgaatttataaaataacattttaagtaaAATCTAGTTTTTATTCACTAAAAACTaactgtccacatatgtggacgcCACTGCGCACTACTTATATATAAaagtactattattattgttcctACAAtatgtttttcattgtttttatattgtactattattgtttttaataaatgagcaGATATGAATAGAATAACAGGccattaaaaaaatcacaatatttcaTATTGTCAGCTCTCTGTCTTTATGTCCCATTTAACACCTTTGTTGCATAGTGTCCATGTATGTGGACaggtaaataaatttaaaataaaattttgtaaaaatgaaaa

Function

symbol description
ifit16 Predicted to enable aminoacyltransferase activity. Predicted to be involved in defense response to virus. Predicted to act upstream of or within cell wall macromolecule biosynthetic process. Predicted to be active in cytosol. Is expressed in several structures, including caudal fin; gill; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including IFIT1 (interferon induced protein with tetratricopeptide repeats 1); IFIT1B (interferon induced protein with tetratricopeptide repeats 1B); and IFIT2 (interferon induced protein with tetratricopeptide repeats 2).

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0044038 cell wall macromolecule biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0016755 transferase activity, transferring amino-acyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-86 Predicted to enable aminoacyltransferase activity. Predicted to be involved in defense response to virus. Predicted to act upstream of or within cell wall macromolecule biosynthetic process. Predicted to be active in cytosol. Is expressed in several structures, including caudal fin; gill; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including IFIT1 (interferon induced protein with tetratricopeptide repeats 1); IFIT1B (interferon induced protein with tetratricopeptide repeats 1B); and IFIT2 (interferon induced protein with tetratricopeptide repeats 2).

Ensembl:

ensembl_id ENSDARG00000056976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023847 True 2264 mRNA 0.39 2 23598205 23603263

Neighbor

gene id symbol gene type direction distance location
XLOC_012094 htr7a coding downstream 52489 23542115 ~ 23545716 (-)
XLOC_012093 NA coding downstream 112869 23483059 ~ 23485336 (-)
XLOC_012092 pcgf5a coding downstream 151445 23434211 ~ 23446760 (-)
XLOC_012091 si:ch211-149k12.3 coding downstream 181308 23411202 ~ 23416897 (-)
XLOC_012090 AL935174.3 coding downstream 356812 23237239 ~ 23241393 (-)
XLOC_012096 ifit15 coding upstream 3932 23607195 ~ 23609210 (-)
XLOC_012097 ifit14 coding upstream 9353 23612616 ~ 23616626 (-)
XLOC_012098 fas coding upstream 16661 23619924 ~ 23631411 (-)
XLOC_012099 NA coding upstream 47271 23650534 ~ 23674495 (-)
XLOC_012100 papss2a coding upstream 77823 23681086 ~ 23709347 (-)
XLOC_012088 BX511309.1 non-coding downstream 672868 22925209 ~ 22925337 (-)
XLOC_012087 BX548077.1 non-coding downstream 811914 22786174 ~ 22786291 (-)
XLOC_012086 NA non-coding downstream 908418 22687170 ~ 22689787 (-)
XLOC_012083 BX511218.1 non-coding downstream 1072460 22521636 ~ 22525745 (-)
XLOC_012103 NA non-coding upstream 382610 23985873 ~ 23987510 (-)
XLOC_012104 NA non-coding upstream 420044 24023307 ~ 24026857 (-)
XLOC_012105 NA non-coding upstream 600436 24203699 ~ 24219682 (-)
XLOC_012106 NA non-coding upstream 693087 24296350 ~ 24301689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location