XLOC_012079 (ttbk1b)


Basic Information

Item Value
gene id XLOC_012079
gene name ttbk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22032296 ~ 22067451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023823
GGTTTCTGTCAAAATTTCCTCAATGGACGAAGTCTGCAGATAAAGAGGGAGATTCACGCCTTTCTGGTTGCCACGCAACAGCCGTCCTCTGTCACGCATGTGCGCGGTGCATAGTGGGAGTATCCGAGCGATGCTGAATCAGTGCTGGAGCGGAGGAGCAGAGGAGGCTGAAAATGGTGCAGCATCAACAAGGGGAAAAGGCGCAGCGGTCGCGCCAGTGGAATAATGCGGCTCTCCTTAAACTCTCACTTTGAGATTTTACTCCGACGACAGAAGAACAGGTAAATGGCAGGGATTGGTAAAGCACTGGCCAGCCGATGCAGTGCGTAGGGCCCGGAGTCCACGGCGACGAAAACATGAACGGGGCGGGAGAGCAGGTCGACATCCTGCCCTCCAACTGCTTGGTGAAAGATCGCTGGAAAGTGCTAAAGAAGATTGGGGGTGGAGGGTTTGGGGAGATATATGAGGCCTACGACTTGTTGACGCGGGAGAATGTGGCTCTTAAGGTGGAATCTGCCCAACAACCCAAACAAGTGCTAAAGATGGAGGTTGCTGTGCTAAAGAAACTACAAGGAAAGAATCATGTTTGCAAATTCATTGGATGTGGAAGAAACGACAAGTTCAATTATGTTGTCATGCAGCTGCAGGGGAGGAATCTTGCTGATCTCAGGAGGAGTCAGCCTAGGGGGACATTTAGCATGAGCACCACGCTACGGTTGGGGAAACAGATCCTTGAGTCCATTGAAGCCATTCACTCTGTGGGCTTCCTGCACCGAGACATTAAACCTTCTAATTTCGCTATGGGTCGGTTGCCGTCAACTTGTAGGAAGTGTTACATGCTGGATTTTGGTTTGGCACGACAGTACACAAATACAAATGGGGAGGTGCGGCCGCCCAGGTCAGTGGCTGGGTTCAGAGGAACGGTGCGATACGCTTCCATTAATGCTCATAAAAACAAGGAAATGGGTCGTCATGATGATTTGTGGTCGTTGTTTTATATGCTGGTAGAGTTTACCGTTGGACAATTACCATGGCGTAAGATAAAAGATAAGGAGCAGGTGGGACAGATTAAAGAACGCTACGAGCACAGGATGCTGTTGAAACACATGCCTGCAGAGTTTCATATCTTTTATGATCATGTGCTGGATTTGGATTATTTCACCAAACCTGATTATCAGTTGCTGATGTCAGTATTTGAGAACAGCATGAAAGACAGGGTGATAACTGAAAACGAGCCGTATGACTGGGAAAAATCTGGAACAGATACGGCACTCCctaccagcacacacacaccaccacaGCAAAACACAAGGCAAACTGCTGCCATTGTGGGGGTGGTAAATGTGACTCCAGTACCCGGTGAACTACCAAGGGAAAACACTGATGATGTTCTGCAAGATGAACACCTGAGTGACCAAGAGAATGCTCCACCTGCTTTAATACCCAGCAGGCCGAGCGAACCGGCTCCAGCCGCACCTGCAGGTGAAGCATGGGATGAAACTGACTTCAATAGAAACCAACTCAGGATCAGCATCAGTAAGACACAAGTAGCAGCAGAGGATGGAGATGAGCCTGCTGGAGGAGGGAGGTCTGTTTCTCCAGCCAGGGGTGGGGAAGGTGATGCTCAGGCTCGTCCTCCAAGGTACCGGAGAGTCAACAGCCCTGAATCAGAGCGTTTGTCTGGTGCAGAGGATAGAGGAGATGGTGCAGATAAACGCTCTCGTCTGGACATGCTGGGCTCTCCATCCAGGCATGTCTACTCTTCTCAGCCTGCTCAGATGCTCTCCTTAGAGGGTGGACAGGGAGAAAGGTTGGCCGGCGGCCGTCATGATGTCTCTGCAGACGGTGACCAGGAGGCCCACAGCAATGCCTTCATACGCTCAGTCCCGCTGGCAGAGGAAGAGGACTTCGACAGCAGGGAGTGGGTGATGATCGATAAAGAAACTGAGCTGAAGGACTTCCTCCCCGGGGCAGAACCAACCACCTCAGGCACCACAGATGAGGAACCTGAGGAATTGCGGCCCCTCGAGGACCACGAGGAGAGGAGAAGGAGAGTGCATGGAGGAGCTGAGGCTGTGGTTCGACCTAAAACACAGCGAGGGATGATGATTGTAGCAGAGGAGGAGGGAGCAGGGCCGAGTCCCGGCCATTCATCCTGTCACACGCTGCCTCGTTCCTGCCCGAGAAGAAGAGAGTCGGAGCCGTTTGGACCTGATGGACCGGACATCGCCGTGGCTGAACCTTCGCCTTCGTTCTCTCAGACGCGTATGAAGCGAGTGGACTTTGTGTCTGGTGTTTTGATGTTTGATGATCTGAGAGAGGAGGTTGTGAAGACTGGAGGTTCAGGAAGTGATGGGAGCCCACGCAGTAGTGAGGGAAGCCCGGAAGGGGCAGCGTCCACCCTACTCGCCCCTGCACATCGAGACCATGACCAGGAAGAGGGCTCACGCACACTGGTGCTTGTGTCTGCCGGTAACGGACAAGTTTCACCTGGGGATGGGCAGGGAACGCTTGCTGCTTTGACACCGCAGGGAGAGCGACCTGTGCCAGAAGAATCTGAACCTGGCACTCTTTCCTCTGTCATTAAATCAGAGCCCAGGCCTATCGTCATGACAACTGCGGCTGTGATCACCAGTGGTTCTTCCTCGCCACCTTTTACTAAAGTGGAGCGCACTTTCATCCACATCGCTGAGACGTCACATCTTAATGTCATGACAGCCAGACACCGTCCGTCTGGATTCGATGAGCCGATATCTGTTGAGCGTGAGGAAATGGGGGAAGAGAAAGAGGATCGGGCAGGGCAACTAGTGGAGATAGAGAGGAATAGTGAAGGGATTAAGGTGGAAAGGGAAGGGGATGAGAAGAAAAAGGAAGAAAGTGAAGCTGAGAAGGAAAAGCAGgaagtagaaaatgtaattaTTAGTAGCAGAGAGGAAGCAGAGACTGTGTTTTTAGCTGAGCAGCCAGTGTCTATAGctattaaagaaaatatttcaaTAGAAACCAAATTAGATGACGAACAAGATGGTGTCACAACAGAGAAAGAACAGGAGCAAGAAGAGAGTCCATCTGTGTCCCCTGAACAAAACAGAGATGCTGAAGTAGAGGATGAGAAGGATGTGTCTCCACCAGAGGTGGAGTCACCTGATAGAAAGCCACTCCCACAAAGGCGGAGCCGTATTCCTGTGCTCATGTCAGAGGATGAAACGGGCTCAGACAAGTCATCGCAGACGAGTCAAGAGCAGTTGCAACGAACTCGCAAAAGCAGACACCAACAGTTGGCCCGTCTGGTTCTGGAGCGTAAACAAACGCATATGATGCGCTCTCGTTCTGCCTCCTCACACTCCCCAACACTCTCCACCACTGCATCTGAGGATGAAGCCCACCAATCTGATGACTCCGCTAAAGGAGCGGATGGGAAAATTAAGAGCAGGATCCCTCGGCCAGTCACGCCTATCAGGGGGTCTTACGACCTGTTAAAGTGCACGACTCTACCGCAAACCCAGAGATCTGTGTCTTTTATTCAATACAGAACCAACAGTTCTATCAATCCCAAGATTCAGAAATCTGCAAGTCTGCACACAAATATTCATCAGCAGCCGCCTAAACCTCAGCTCCGCCCCTCTAAAACACTTCCACCCCTTCCTCCATCTTCAGGTCCTTCCCACACTCAAGGAAGCCGGACGGCCACACGTACCGTTACTCGTACCTCAGCTCCTAATGCCACCAGAAGCATCAGTACTTCCCCGCGAAGCTACGGCACCTCCCGCACCGACAGCCCCTCGCCTCAGCGCATTCGACGACAGCTTGCAGCCAATGAAACGCAACGGCAAGCCCAGCAGCCCAGACCTCCAGTCCCGTCTGTGTCCAAATCCAAACCTCAGGACTCCACCACCCCAAGAAAGAGCAAATCCCACCCATCAACCTCAACAAAAGCAAAGAAAGATCCACTggagtcaaaaacaaaaacaagataattaCAGTGTGTAAAGAAGGACTCCATTGCTCTAGATTATCTTCATCCTCAGCATCAACACCACAATCACTCTCTGAATTGTCAGACACGCAACCAAACAATATGAAGGACACGTTCGCTATTCTGCCAAGTGACTGCAGCAGCTACTTAAATACCTCTGCTGAGGAAAACCTCTGACATTTACAcacagcgagtgtgtgtgtgggagagttGTCATTAATGAGGGGTGTTGGACGGATAAACACGCCTCATATGCCTTAAACCTGCAAAGGAAATTATTGCTGCCATCACAAAAAAGCTTCCACAGGCTCTCATGTCCACAGCGCAAACACTACTATCATGTTCAATAATGAAGCCAATCATACTATACGAGTAAAAATTGGGATCTACTTAGCTTTAATGCTTTTCAATACATTAAAGTACATGCCAGTTATTCACTGAAATATCATTTTTGAAACAGGGCAAACCAACATCAGAATCAGAATCTACAAAtcctaaaataattacaaaaattattattcaatttatttgtgtttaagagAGACTTTTATATCAGCTAATGCAGTGTGTTAACCTGTATTAGGTAGTTCTGTGCAGAAATTTCTGAAAAGTGAGCGATTCTTAATTCTCTAGTTCTAAAACCTACATTTAATTTCTACACAGAGCTAAGGGTATGTTTACACAACACTGTCAACTAAAAACATTTCAACTCGTTTATTGCATTTTCTGCTGAtgatttacataaaaaatttaaattaggtAGCTAAGAATACTAATTTTAGAtaaccaaggctcattctgattacgtacccctatatacatttcagaaCACAGC
>TCONS_00023824
TTAGAGGGTGGACAGGGAGAAAGGTTGGCCGGCGGCCGTCATGATGTCTCTGCAGACGGTGACCAGGAGGCCCACAGCAATGCCTTCATACGCTCAGTCCCGCTGGCAGAGGAAGAGGACTTCGACAGCAGGGAGTGGGTGATGATCGATAAAGAAACTGAGCTGAAGGACTTCCTCCCCGGGGCAGAACCAACCACCTCAGGCACCACAGATGAGGAACCTGAGGAATTGCGGCCCCTCGAGGACCACGAGGAGAGGAGAAGGAGAGTGCATGGAGGAGCTGAGGCTGTGGTTCGACCTAAAACACAGCGAGGGATGATGATTGTAGCAGAGGAGGAGGGAGCAGGGCCGAGTCCCGGCCATTCATCCTGTCACACGCTGCCTCGTTCCTGCCCGAGAAGAAGAGAGTCGGAGCCGTTTGGACCTGATGGACCGTTGGAGGAGGACAGGCCACACCCACATCACTCATTCCCGAGGCCCGCCCATTTGAGAAGACTGGCGTCGTATGTGTTTTCCTCCACTACCATGGACACGGAGCCCTTCCCCCATGACCCCGCCCTTGGGGGAGCGGCCATTCAGCGCAGTCGCTCAGCTGAAAGCAGCCCCGCCCACCGCCATGCCCATCGCAGACATGCCCTGTTGCCAGGCAACCCCAGAGCCCGGCATTCTGTACTAAACCTACCACGCCTACACATTCAGCAAGTGCTGGCAAAACTTATGAACAAGACATGATTCGCCCACCATCAATGTACACTGACGCACACGTGCGGTGGCGTTTTAATAGAAGGGGAGCACGCGTGCCCACTTTTGTGCCCATGGATGAA
>TCONS_00023825
GACTTGTTGACGCGGGAGAATGTGGCTCTTAAGGTGGAATCTGCCCAACAACCCAAACAAGTGCTAAAGATGGAGGTTGCTGTGCTAAAGAAACTACAAGGAAAGAATCATGTTTGCAAATTCATTGGATGTGGAAGAAACGACAAGTTCAATTATGTTGTCATGCAGCTGCAGGGGAGGAATCTTGCTGATCTCAGGAGGAGTCAGCCTAGGGGGACATTTAGCATGAGCACCACGCTACGGTTGGGGAAACAGATCCTTGAGTCCATTGAAGCCATTCACTCTGTGGGCTTCCTGCACCGAGACATTAAACCTTCTAATTTCGCTATGGGTCGGTTGCCGTCAACTTGTAGGAAGTGTTACATGCTGGATTTTGGTTTGGCACGACAGTACACAAATACAAATGGGGAGGTGCGGCCGCCCAGGTCAGTGGCTGGGTTCAGAGGAACGGTGCGATACGCTTCCATTAATGCTCATAAAAACAAGGAAATGGGTCGTCATGATGATTTGTGGTCGTTGTTTTATATGCTGGTAGAGTTTACCGTTGGACAATTACCATGGCGTAAGATAAAAGATAAGGAGCAGGTGGGACAGATTAAAGAACGCTACGAGCACAGGATGCTGTTGAAACACATGCCTGCAGAGTTTCATATCTTTTATGATCATGTGCTGGATTTGGATTATTTCACCAAACCTGATTATCAGTTGCTGATGTCAGTATTTGAGAACAGCATGAAAGACAGGGTGATAACTGAAAACGAGCCGTATGACTGGGAAAAATCTGGAACAGATACGGCACTCCctaccagcacacacacaccaccacaGCAAAACACAAGGCAAACTGCTGCCATTGTGGGGGTGGTAAATGTGACTCCAGTACCCGGTGAACTACCAAGGGAAAACACTGATGATGTTCTGCAAGATGAACACCTGAGTGACCAAGAGAATGCTCCACCTGCTTTAATACCCAGCAGGCCGAGCGAACCGGCTCCAGCCGCACCTGCAGGTGAAGCATGGGATGAAACTGACTTCAATAGAAACCAACTCAGGATCAGCATCAGTAAGCCTGCTGGAGGAGGGAGGTCTGTTTCTCCAGCCAGGGGTGGGGAAGGTGATGCTCAGGCTCGTCCTCCAAGGTACCGGAGAGTCAACAGCCCTGAATCAGAGCGTTTGTCTGGTGCAGAGGATAGAGGAGATGGTGCAGATAAACGCTCTCGTCTGGACATGCTGGGCTCTCCATCCAGGCATGTCTACTCTTCTCAGCCTGCTCAGATGCTCTCCTTAGAGGGTGGACAGGGAGAAAGGTTGGCCGGCGGCCGTCATGATGTCTCTGCAGACGGTGACCAGGAGGCCCACAGCAATGCCTTCATACGCTCAGTCCCGCTGGCAGAGGAAGAGGACTTCGACAGCAGGGAGTGGGTGATGATCGATAAAGAAACTGAGCTGAAGGACTTCCTCCCCGGGGCAGAACCAACCACCTCAGGCACCACAGATGAGGAACCTGAGGAATTGCGGCCCCTCGAGGACCACGAGGAGAGGAGAAGGAGAGTGCATGGAGGAGCTGAGGCTGTGGTTCGACCTAAAACACAGCGAGGGATGATGATTGTAGCAGAGGAGGAGGGAGCAGGGCCGAGTCCCGGCCATTCATCCTGTCACACGCTGCCTCGTTCCTGCCCGAGAAGAAGAGAGTCGGAGCCGTTTGGACCTGATGGACCGTTGGAGGAGGACAGGCCACACCCACATCACTCATTCCCGAGGCCCGCCCATTTGAGAAGACTGGCGTCGTATGTGTTTTCCTCCACTACCATGGACACGGAGCCCTTCCCCCATGACCCCGCCCTTGGGGGAGCGGCCATTCAGCGCAGTCGCTCAGCTGAAAGCAGCCCCGCCCACCGCCATGCCCATCGCAGACATGCCCTGTTGCCAGGCAACCCCAGAGCCCGGCATTCTGTACTAAACCTACCACGCCTACACATTCAGCAAGTGCTGGCAAAACTTATGAACAAGACATGA

Function

symbol description
ttbk1b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and peptidyl-tyrosine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human TTBK1 (tau tubulin kinase 1).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100609-5 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in peptidyl-serine phosphorylation and peptidyl-tyrosine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human TTBK1 (tau tubulin kinase 1).

Ensembl:

ensembl_id ENSDARG00000056659

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023823 False 4811 mRNA 0.49 15 22032296 22067451
TCONS_00023824 False 824 mRNA 0.58 2 22044209 22048233
TCONS_00023825 True 2016 mRNA 0.52 12 22044301 22062364

Neighbor

gene id symbol gene type direction distance location
XLOC_012078 zmp:0000001102 coding downstream 11083 22014345 ~ 22021213 (-)
XLOC_012077 slc22a7b.1 coding downstream 21628 22002857 ~ 22010668 (-)
XLOC_012076 slc22a7b.2 coding downstream 30361 21994043 ~ 22001935 (-)
XLOC_012075 slc22a7b.3 coding downstream 38589 21982617 ~ 21993707 (-)
XLOC_012074 cuzd1.1 coding downstream 147973 21870044 ~ 21884323 (-)
XLOC_012080 mrps5 coding upstream 40251 22107702 ~ 22137199 (-)
XLOC_012081 CU104709.1 coding upstream 251629 22319080 ~ 22324727 (-)
XLOC_012082 NA coding upstream 417354 22484805 ~ 22504384 (-)
XLOC_012083 BX511218.1 coding upstream 454185 22521636 ~ 22525745 (-)
XLOC_012084 si:ch211-125o16.4 coding upstream 477197 22544648 ~ 22552678 (-)
XLOC_012073 NA non-coding downstream 168114 21863655 ~ 21864182 (-)
XLOC_012063 NA non-coding downstream 811817 21213422 ~ 21220479 (-)
XLOC_012061 AL929290.1 non-coding downstream 901919 21130261 ~ 21130377 (-)
XLOC_012055 NA non-coding downstream 1108768 20900590 ~ 20923528 (-)
XLOC_012054 BX927186.1 non-coding downstream 1328999 20703179 ~ 20703297 (-)
XLOC_012086 NA non-coding upstream 619719 22687170 ~ 22689787 (-)
XLOC_012087 BX548077.1 non-coding upstream 718723 22786174 ~ 22786291 (-)
XLOC_012088 BX511309.1 non-coding upstream 857758 22925209 ~ 22925337 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000312_00996558_01026242 TTBK1B coding CI01000312 null 995114 ~ 1026242 (-)