G445027


Basic Information

Item Value
gene id G445027
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000313
NCBI id null
chromosome length 2068795
location 1470238 ~ 1473157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU510867
AGCGAGTCGGCGATGTTGTCGGTCCTTATTAAAACGATGATGCATAAAATACGATATTGAAGCTCGTACAGAAGGCTCGGTACCGTTTCCTCCGGTGTATTTTAGGACGAGGGAAGGATTTTCGGCGGTCGAGGGGCTTCGTCAAGTCCAACTGCTCAACACCTGAAGTGAGGCCGTGGACTTCAAAGCAGCTGGATCCACAGAACGCGCTCTGGGACTCGCGCATCTCTGCTCGCGCTGACATGATCTCTACGCTGTTTTGGAGAGCTCTTTTTTCCTGTGATAAGAACATTTATTTTTAAAAAAAGTTTTTTTTATTCATTTTTTTTCACATACACTATTGGTTTGAGCCTGAAAACAATAGTTGGCAAAATGGACAACAATCAGGGTTCTCTCCAGGTGCTCATCTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU510867 True 412 lncRNA 0.45 2 1470238 1473157

Neighbor

gene id symbol gene type direction distance location
CI01000313_01249763_01250659 NA coding downstream 219579 1249631 ~ 1250659 (-)
CI01000313_01140265_01183820 PDZD8 coding downstream 285909 1139036 ~ 1184329 (-)
CI01000313_01063333_01083888 MINPP1A coding downstream 386350 1063259 ~ 1083888 (-)
CI01000313_01043093_01055957 PAPSS2A, PAPSS2 coding downstream 414281 1042184 ~ 1055957 (-)
CI01000313_01019710_01027993 PTEN, PTENA coding downstream 442245 1019573 ~ 1027993 (-)
CI01000313_01502545_01526050 WDPCP coding upstream 29388 1502545 ~ 1526050 (-)
CI01000313_01602067_01603268 NA coding upstream 128787 1601744 ~ 1603268 (-)
CI01000313_01616695_01623806 PELI1, PELI1B coding upstream 142246 1615403 ~ 1623806 (-)
CI01000313_01653800_01671609 ABCH1 coding upstream 179245 1652402 ~ 1671609 (-)
CI01000313_01677464_01683934 NA coding upstream 203341 1676498 ~ 1683934 (-)
G445019 NA non-coding downstream 158711 1311153 ~ 1311527 (-)
G445018 NA non-coding downstream 159889 1310103 ~ 1310349 (-)
G445016 NA non-coding downstream 160628 1309396 ~ 1309610 (-)
G445012 NA non-coding downstream 165271 1304397 ~ 1304967 (-)
G445008 NA non-coding downstream 167968 1302043 ~ 1302270 (-)
G445126 NA non-coding upstream 9934 1483091 ~ 1483389 (-)
G445148 NA non-coding upstream 84226 1557383 ~ 1557599 (-)
G445134 NA non-coding upstream 86950 1560107 ~ 1560601 (-)
G445183 NA non-coding upstream 130781 1603938 ~ 1604264 (-)
CI01000313_00982839_00997272 NA other downstream 480946 982829 ~ 997590 (-)
G444714 NA other downstream 1070142 397607 ~ 400096 (-)
G444653 NA other downstream 1096774 371520 ~ 373464 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012107 NA non-coding NC_007128.7 CM002901.2 24307366 ~ 24318571 (-)
rainbow trout (Oncorhynchus mykiss) G154591 NA non-coding NC_048566.1 CM023220.2 50599718 ~ 50600151 (+)
tiger barb (Puntius tetrazona) G119670 NA non-coding NC_056715.1 CM032084.1 8572621 ~ 8575597 (-)