G446227


Basic Information

Item Value
gene id G446227
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1563590 ~ 1563982 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU512245
GCCAATAGCGAGCTATTTAAAGAAGACACACCGGCAGCACCCCTACACGACTCGGACCGCATTGATCACGTCCCGGGCTGCAGCTGAGAGACACAGACCCCTTTACCCCTCAAGTGTTTTCATGACTTTTTCAAAAAATATTCTCGCTTCAATGAAATTTGAACTCCGTTCACAGGATTTTGTGCCATTGCCATAACATTGATTTATTATGTATATCTATAGCTGCCAGTCTATCTGTCTTCTTTAAATAGCTCGCTATTGGCTGCACTATTCGCTTACGGCCATACCACCCTGAGCACGCCCGATCTCGTCCGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTTGGATGGGAGACCGCCTGGGAATACCAGGTGCTGTAAGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU512245 True 393 lncRNA 0.48 1 1563590 1563982

Neighbor

gene id symbol gene type direction distance location
CI01000314_01398459_01474471 TIAM2A coding upstream 89119 1398459 ~ 1474471 (+)
CI01000314_01334065_01347608 SCAF8 coding upstream 215280 1334065 ~ 1348310 (+)
CI01000314_01238763_01250499 NA coding upstream 312509 1238621 ~ 1251081 (+)
CI01000314_01096672_01145574 CNKSR3 coding upstream 417994 1096672 ~ 1145596 (+)
CI01000314_01059252_01065169 QPCT coding upstream 497783 1059252 ~ 1065807 (+)
CI01000314_01635113_01658762 AREL1 coding downstream 71131 1635113 ~ 1658762 (+)
CI01000314_01695225_01696495 NA coding downstream 131243 1695225 ~ 1696499 (+)
CI01000314_01700805_01709471 NA coding downstream 136823 1700805 ~ 1709537 (+)
CI01000314_01716386_01722096 NA coding downstream 152117 1716099 ~ 1722096 (+)
G446203 NA non-coding upstream 264807 1298498 ~ 1298783 (+)
G446171 NA non-coding upstream 273532 1215825 ~ 1290058 (+)
G446170 NA non-coding upstream 280382 1206793 ~ 1283208 (+)
G446168 NA non-coding upstream 289559 1204323 ~ 1274031 (+)
G446178 NA non-coding upstream 291182 1271773 ~ 1272408 (+)
G446209 NA non-coding downstream 52941 1616923 ~ 1623604 (+)
G446256 NA non-coding downstream 119951 1683933 ~ 1684143 (+)
G446259 NA non-coding downstream 128224 1692206 ~ 1692661 (+)
G446181 NA non-coding downstream 158238 1722220 ~ 1724903 (+)
G445422 NA other upstream 1250569 311532 ~ 313021 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038766 CABZ01012382.1 non-coding NW_018394436.1 KZ116044.1 30259 ~ 30377 (-)
rainbow trout (Oncorhynchus mykiss) LOC118942089 NA misc NC_048584.1 CM023238.2 4620643 ~ 4620844 (-)
eurasian perch (Perca fluviatilis) G126807 NA non-coding NC_053123.1 CM020920.1 24882094 ~ 24883308 (+)