G446209


Basic Information

Item Value
gene id G446209
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1616923 ~ 1623604 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU512218
TATAATATACACATGCTTAGATATCAGCCTCCCCCATTTAGAGGATTAAACAGACAAAGAAAATTGATTGAGAAAAGAAACGAAGCAACTGTCATAAGCAATCTTGTTTTTAATTAATGTATTTGAACAATCTTATAGCAGCGACCACAAAACAAGTCAGCAATTACCAACAAAAGAGGGCTTAAATTAATACCAAGCAGAGTATAGTAATGAAGTTATCTTGCATTTTATAAATGATACAATTTTATGCTCTTAAACTATGTATGGAAGTAGGGCACAAATTACAACAATATGACCTCCTTTTAAAAAAGAATAGTTGGAAACAATCTACAGTATGAAGACAATTTGCACAGTACGGGTATATAGCAAACTTCTAACGGTATGTTTTCACTTTAAATATGTAAGTCGTCATTGTGAATCAAGAACAGAAATAAGCACTGCAGAAAAAATGACAGGTACAGGAATATAACTAAGCAAACACAAGTAAATTAGGAAATGTCATATAGTGTTTTTAAGATTTGTGATAGTAACAGGTGCTACAGTGGCAGTCTGTGTGGTTCACTAGTTTGACATCGTTGACAAGTACCGTTTAACTTCTTTGGCTACACAGCATGTAGCTTCTGATGTGATATTTTTGGGAACAAGCATGGTTTTCTTGGACCTCAGGGGTGTGGGGTAAGCCCTGGAAAAGCAGCATCCCATACACTGATAGACGGGAGCGCCGGGTTTTGAGAAAATGTTGTTCTCCTTGAGTTTGCACTCCTCACATCCAACTTGTATATAAATACACACACACATACAAATATATATAACAAAAATGTAGCAGTTCCATGTTAATTATTAGAATTTAGTCATTGATTATCAACTTACAGTTAGTCATATCATTTCTTGGATATACTTGTCCAAGATGAATAAGCATTAAAAACAATAAAATACTTGCTCCAGCATATCTTGTCCAAAACATGATGGCTATAATAGGAAAAAAATAAAAACAAAACAGCTGAAAAATAAATTACACTCACATTTTTAAAAGACATCAAATATGTCTTCTCAGAATTTGTTATATTTGTACATTTTAGTGTATTCTTTAAGAGCACAAATATTTAATTTGACAAAAAAAAAAAAAATTACCTTTGTTCTTGACTTCGAGTGAGATGTGATCAATCTGACTTCTCAGACGCAGGTATAGCTACCTTTTATACCTTGCTTACGCCTGCCCCATTTTGTGTGTGTGTGTGTGAGTGTGTGTGTGCATCGCATGTGATTGTTCCCTTGCTGACCTTGTAATCCATTAGTTAAATGAAGAACTGAATATGTACTGTAGTTTCAATTAACTATATTCTGGCTTGAGATCTCTGACTTTAACCGGCATTACATTGTTGATTGTGATAACGCACACTAAAGCTTGTACATAACACATTCGTTCCATTTTCAATCCAAACCTCCGGATTGTTACATGATTTACTGTCACATGAAGTAATCTGTAATTAACGTTGTCCCTCAACTCTTCTATAAACACACAGTATCAATTGTCAAGGATGAATGTTTGTTTGCCTCGACTATCTCTCAATCTTTCCATCTGCAGCAAATCCACAAGACCTTGGTTTGGATTATGCTGTTTCATGCCTGATGCAAAGGTAATTCAATATTTTCAATGCCAGATGGAGAGGAGAATGTGACATTAATAAATTAATAATATTTTATGCTATTTTCAACACTGC
>TU512220
TATAATATACACATGCTTAGATATCAGCCTCCCCCATTTAGAGGATTAAACAGACAAAGAAAATTGATTGAGAAAAGAAACGAAGCAACTGTCATAAGCAATCTTGTTTTTAATTAATGTATTTGAACAATCTTATAGCAGCGACCACAAAACAAGTCAGCAATTACCAACAAAAGAGGGCTTAAATTAATACCAAGCAGAGTATAGTAATGAAGTTATCTTGCATTTTATAAATGATACAATTTTATGCTCTTAAACTATGTATGGAAGTAGGGCACAAATTACAACAATATGACCTCCTTTTAAAAAAGAATAGTTGGAAACAATCTACAGTATGAAGACAATTTGCACAGTACGGGTATATAGCAAACTTCTAACGGTATGTTTTCACTTTAAATATGTAAGTCGTCATTGTGAATCAAGAACAGAAATAAGCACTGCAGAAAAAATGACAGGTACAGGAATATAACTAAGCAAACACAAGTAAATTAGGAAATGTCATATAGTGTTTTTAAGATTTGTGATAGTAACAGGTGCTACAGTGGCAGTCTGTGTGGTTCACTAGTTTGACATCGTTGACAAGTACCGTTTAACTTCTTTGGCTACACAGCATGTAGCTTCTGATGTGATATTTTTGGGAACAAGCATGGTTTTCTTGGACCTCAGGGGTGTGGGGTAAGCCCTGGAAAAGCAGCATCCCATACACTGATAGACGGGAGCGCCGGGTTTTGAGAAAATGTTGTTCTCCTTGAGTTTGCACTCCTCACATCCAACTTGTATATAAATACACACACACATACAAATATATATAACAAAAATGTAGCAGTTCCATGTTAATTATTAGAATTTAGTCATTGATTATCAACTTACAGTTAGTCATATCATTTCTTGGATATACTTGTCCAAGATGAATAAGCATTAAAAACAATAAAATACTTGCTCCAGCATATCTTGTCCAAAACATGATGGCTATAATAGGAAAAAAATAAAAACAAAACAGCTGAAAAATAAATTACACTCACATTTTTAAAAGACATCAAATATGTCTTCTCAGAATTTGTTATATTTGTACATTTTAGTGTATTCTTTAAGAGCACAAATATTTTACAAAAAAAAAAAAAAAAAAAAAATATTATTGTGAAGACAACATTAAATTGTCTCCATTTTAAATGAACAGCAGTATTTTTAATCATGGCAGCTTGAAAATGCGTTTAAATAAATCCTGCCTCGTTTTC
>TU512222
TATAATATACACATGCTTAGATATCAGCCTCCCCCATTTAGAGGATTAAACAGACAAAGAAAATTGATTGAGAAAAGAAACGAAGCAACTGTCATAAGCAATCTTGTTTTTAATTAATGTATTTGAACAATCTTATAGCAGCGACCACAAAACAAGTCAGCAATTACCAACAAAAGAGGGCTTAAATTAATACCAAGCAGAGTATAGTAATGAAGTTATCTTGCATTTTATAAATGATACAATTTTATGCTCTTAAACTATGTATGGAAGTAGGGCACAAATTACAACAATATGACCTCCTTTTAAAAAAGAATAGTTGGAAACAATCTACAGTATGAAGACAATTTGCACAGTACGGGTATATAGCAAACTTCTAACGGTATGTTTTCACTTTAAATATGTAAGTCGTCATTGTGAATCAAGAACAGAAATAAGCACTGCAGAAAAAATGACAGGTACAGGAATATAACTAAGCAAACACAAGTAAATTAGGAAATGTCATATAGTGTTTTTAAGATTTGTGATAGTAACAGGTGCTACAGTGGCAGTCTGTGTGGTTCACTAGTTTGACATCGTTGACAAGTACCGTTTAACTTCTTTGGCTACACAGCATGTAGCTTCTGATGTGATATTTTTGGGAACAAGCATGGTTTTCTTGGACCTCAGGGGTGTGGGGTAAGCCCTGGAAAAGCAGCATCCCATACACTGATAGACGGGAGCGCCGGGTTTTGAGAAAATGTTGTTCTCCTTGAGTTTGCACTCCTCACATCCAAGTTAGTCATATCATTTCTTGGATATACTTGTCCAAGATGAATAAGCATTAAAAACAATAAAATACTTGCTCCAGCATATCTTGTCCAAAACATGATGGCTATAATAGGAAAAAAATAAAAACAAAACAACCTTTGTTCTTGACTTCGAGTGAGATGTGATCAATCTGACTTCTCAGACGCAGGTATAGCTACCTTTTATACCTTGCTTACGCCTGCCCCATTTTGTGTGTGTGTGTGTGAGTGTGTGTGTGCATCGCATGTGATTGTTCCCTTGCTGACCTTGTAATCCATTAGTTAAATGAAGAACTGAATATGTACTGTAGTTTCAATTAACTATATTCTGGCTTGAGATCTCTGACTTTAACCGGCATTACATTGTTGATTGTGATAACGCACACTAAAGCTTGTACATAACACATTCGTTCCATTTTCAATCCAAACCTCCGGATTGTTACATGATTTACTGTCACATGAAGTAATCTGTAATTAACGTTGTCCCTCAACTCTTCTATAAACACACAGTATCAATTGTCAAGGATGAATGTTTGTTTGCCTCGACTATCTCTCAATCTTTCCATCTGCAGCAAATCCACAAGACCTTGGTTTGGATTATGCTGTTTCATGCCTGATGCAAAGGTAATTCAATATTTTCAATGCCAGATGGAGAGGAGAATGTGACATTAATAAATTAATAATATTTTATGCTATTTTCAACACTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU512218 False 1721 lncRNA 0.34 2 1616923 1618731
TU512220 False 1235 lncRNA 0.32 3 1616923 1623604
TU512222 True 1493 lncRNA 0.36 4 1616923 1618731

Neighbor

gene id symbol gene type direction distance location
CI01000314_01398459_01474471 TIAM2A coding upstream 142452 1398459 ~ 1474471 (+)
CI01000314_01334065_01347608 SCAF8 coding upstream 268613 1334065 ~ 1348310 (+)
CI01000314_01238763_01250499 NA coding upstream 365842 1238621 ~ 1251081 (+)
CI01000314_01096672_01145574 CNKSR3 coding upstream 471327 1096672 ~ 1145596 (+)
CI01000314_01059252_01065169 QPCT coding upstream 551116 1059252 ~ 1065807 (+)
CI01000314_01635113_01658762 AREL1 coding downstream 11509 1635113 ~ 1658762 (+)
CI01000314_01695225_01696495 NA coding downstream 71621 1695225 ~ 1696499 (+)
CI01000314_01700805_01709471 NA coding downstream 77201 1700805 ~ 1709537 (+)
CI01000314_01716386_01722096 NA coding downstream 92495 1716099 ~ 1722096 (+)
G446227 NA non-coding upstream 52941 1563590 ~ 1563982 (+)
G446203 NA non-coding upstream 318140 1298498 ~ 1298783 (+)
G446171 NA non-coding upstream 326865 1215825 ~ 1290058 (+)
G446170 NA non-coding upstream 333715 1206793 ~ 1283208 (+)
G446168 NA non-coding upstream 342892 1204323 ~ 1274031 (+)
G446256 NA non-coding downstream 60329 1683933 ~ 1684143 (+)
G446259 NA non-coding downstream 68602 1692206 ~ 1692661 (+)
G446181 NA non-coding downstream 98616 1722220 ~ 1724903 (+)
G445422 NA other upstream 1303902 311532 ~ 313021 (+)

Expression


Co-expression Network