RNA id: TU512220


Basic Information

Item Value
RNA id TU512220
length 1235
lncRNA type antisense_over
GC content 0.32
exon number 3
gene id G446209
representative False

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1616923 ~ 1623604 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATAATATACACATGCTTAGATATCAGCCTCCCCCATTTAGAGGATTAAACAGACAAAGAAAATTGATTGAGAAAAGAAACGAAGCAACTGTCATAAGCAATCTTGTTTTTAATTAATGTATTTGAACAATCTTATAGCAGCGACCACAAAACAAGTCAGCAATTACCAACAAAAGAGGGCTTAAATTAATACCAAGCAGAGTATAGTAATGAAGTTATCTTGCATTTTATAAATGATACAATTTTATGCTCTTAAACTATGTATGGAAGTAGGGCACAAATTACAACAATATGACCTCCTTTTAAAAAAGAATAGTTGGAAACAATCTACAGTATGAAGACAATTTGCACAGTACGGGTATATAGCAAACTTCTAACGGTATGTTTTCACTTTAAATATGTAAGTCGTCATTGTGAATCAAGAACAGAAATAAGCACTGCAGAAAAAATGACAGGTACAGGAATATAACTAAGCAAACACAAGTAAATTAGGAAATGTCATATAGTGTTTTTAAGATTTGTGATAGTAACAGGTGCTACAGTGGCAGTCTGTGTGGTTCACTAGTTTGACATCGTTGACAAGTACCGTTTAACTTCTTTGGCTACACAGCATGTAGCTTCTGATGTGATATTTTTGGGAACAAGCATGGTTTTCTTGGACCTCAGGGGTGTGGGGTAAGCCCTGGAAAAGCAGCATCCCATACACTGATAGACGGGAGCGCCGGGTTTTGAGAAAATGTTGTTCTCCTTGAGTTTGCACTCCTCACATCCAACTTGTATATAAATACACACACACATACAAATATATATAACAAAAATGTAGCAGTTCCATGTTAATTATTAGAATTTAGTCATTGATTATCAACTTACAGTTAGTCATATCATTTCTTGGATATACTTGTCCAAGATGAATAAGCATTAAAAACAATAAAATACTTGCTCCAGCATATCTTGTCCAAAACATGATGGCTATAATAGGAAAAAAATAAAAACAAAACAGCTGAAAAATAAATTACACTCACATTTTTAAAAGACATCAAATATGTCTTCTCAGAATTTGTTATATTTGTACATTTTAGTGTATTCTTTAAGAGCACAAATATTTTACAAAAAAAAAAAAAAAAAAAAAATATTATTGTGAAGACAACATTAAATTGTCTCCATTTTAAATGAACAGCAGTATTTTTAATCATGGCAGCTTGAAAATGCGTTTAAATAAATCCTGCCTCGTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512245 lncRNA upstream 52941 1563590 ~ 1563982 (+) True G446227
TU512212 lncRNA upstream 318140 1298498 ~ 1298783 (+) True G446203
TU512171 lncRNA upstream 344515 1271889 ~ 1272408 (+) False G446178
TU512169 lncRNA upstream 344620 1271773 ~ 1272303 (+) False G446178
TU512276 lncRNA downstream 60329 1683933 ~ 1684143 (+) True G446256
TU512279 lncRNA downstream 68602 1692206 ~ 1692661 (+) True G446259
TU512181 lncRNA downstream 98616 1722220 ~ 1724903 (+) True G446181
CI01000314_01398459_01474471.mRNA mRNA upstream 142452 1398459 ~ 1474471 (+) True CI01000314_01398459_01474471
CI01000314_01334065_01347608.mRNA mRNA upstream 268613 1334065 ~ 1348310 (+) True CI01000314_01334065_01347608
CI01000314_01238763_01250499.mRNA mRNA upstream 365842 1238621 ~ 1251081 (+) True CI01000314_01238763_01250499
CI01000314_01096672_01145574.mRNA mRNA upstream 471327 1096672 ~ 1145596 (+) True CI01000314_01096672_01145574
CI01000314_01059252_01065169.mRNA mRNA upstream 551116 1059252 ~ 1065807 (+) True CI01000314_01059252_01065169
CI01000314_01635113_01658762.mRNA mRNA downstream 11509 1635113 ~ 1658762 (+) True CI01000314_01635113_01658762
CI01000314_01695225_01696495.mRNA mRNA downstream 71621 1695225 ~ 1696499 (+) True CI01000314_01695225_01696495
CI01000314_01700805_01709471.mRNA mRNA downstream 77201 1700805 ~ 1709537 (+) True CI01000314_01700805_01709471
CI01000314_01716386_01722096.mRNA mRNA downstream 92495 1716099 ~ 1722096 (+) True CI01000314_01716386_01722096
TU511312 other upstream 1303902 311532 ~ 313021 (+) True G445422

Expression Profile