CI01000315_01023268_01038848 (TTBK2A, TTBK2)


Basic Information

Item Value
gene id CI01000315_01023268_01038848
gene name TTBK2A, TTBK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 1023174 ~ 1038848 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000315_01023268_01038848.mRNA
ATGAGCGCGGGGCAGGAGCAGACGGACATCCTGTCTACGGGCATTCTGGTGAAGGAACGATGGAAAGTAGTGAAAAAAATCGGCGGTGGTGGCTTTGGCGAGATCTATGAGGCTCTGGACCTGATGAACCGCACCAACGTGGCTCTGAAAGCAGAATCAGCTCAACAACCCAAACAGGTTCTGAAGATGGAGGTGGCAGTGTTAAAGAAACTTCAAGGCAAGACAGAGTGGTTTTATCTCTTCCTGAGGGAAAGACTTGTAACTGGAGATCTCTCTATCTACTCACCCCGTGGGAAGAGAAGAAAAGATCACGTTTGTCGGTTTGTTGGATGTGGCCGCAATGATCGCTTTAACTATGTTGTCATGGAACTTCAGGGCCGTAATTTAGCGGATCTGAGGAGGAGCATGAACCGTGGTACTTTCACAGTCAGCACTACACTCAGACTGTGTCTGCAGATACTGGAGGCAATCGAGAGCATCCACTCAGTGGGCTTTTTACACCGTGACATTAAACCGTCCAACTTTGCCATGGGCCGATTCCCTAGCACATGTCGAACATGCTACATGTTAGACTTTGGTTTGGCACGCCAGTTTACAAACTCCTGTCAAGAAGTCAGACCGCCGCGTCCTGTTGCAGGGTTTAGAGGTACAGTACGATACGCCTCAGTCAATGCCCACAAGAACAAGGAGATGGGAAGACATGATGACTTGTGGTCTTTGTTCTACATGCTGGTGGAATTCTTGGTCGGGCAACTACCCTGGAGGAAGATAAAAGACAAGGAGCAAGTGGGGAAATTAAAAGAGACGTACGATCATCGGCTCATGTTGAAACACCTGCCCCCAGACTTCAATGTCTTTCTGGACCACATCAGTAATCTGGACTACTTTACCAAACCTGACTATCAGCTACTGAGAACCGTTTTTGAGAATAGCATGAGAACCTACAACGTAGTGGAAAATGACCCGTATGATTGGGAAAGGATGAGCTCAGATAGCCCACAGACAATCACCACTGCGGCAAACACGCCACAGCATCACACACGCCTCACACCAGCTCAGATGGGCATTTTGAATGCCTCCATGGTGCCTGGAGATATGAAGGAGAACACAGATGAAGTTCTGCAAGATGAGCAGCTCAGTGATGGGGACAATGCTCGGCCCGAGCATCTGCCTGGATCTTCGCACCTTCCTCTCAGGAACCAGGAGACTGATGTCTGGGAGGACCTGGATCGCAACCGGAACAGAATTTGTCCTGCTGTCTGGAAGATGGCAACAGAGGATGAACATAGCAACCAAGGCAATCAGAGTCCCCGTGCAGGGCTTAGCATTGGTTCACCAGTGCGAGTCCGGTCAGAGGTGGTGCCCTCAGATAGAGACACTCCTCTTCTGAGGAAACTGCGCAACATCCATAGCTTTGAGCTGGAGAAGAGGCTAACTTTGGAGCCTAAACCCAACACTGAGCGTTTTGTGGAGGCTTGTTCTGGTAAGCAGCCACCTGGTACAGCACAGGAAAGGGAAGCTGATGGTGTCCCTGGCATGGCCATGTCCAACGGAAGTCACACAGATCGTGTTTGGCACTATGACGAGGAATTCCGCTCTGGCGGTGGCACGCCCAAGCCTGCTTCACCAGGATCTCCTGAGCAGGGCGACGGTGCAGCCAACAGTGGCTTTGTTGCTCTAAACCTGAGCTCAGGTCTACAAGATGTTGAGTTGCATGATTGGGTGATGGTAGAGAAGGGCTCTGACCTGCAGGACTTCAAAGAGGCAGCAGGAAGTAGCCCTGGTCATGAGGCCAAACTGACTAGTAGCCCGTCAGATGAGTGTGAAGAGGATCCAGAGGTTTTGCAGCCAATGGATGAATCACCGGATAAAGAATCCACTCCTAGTCCCATACAAGGAGAAACTCACATGCCTCACACAGTCCAGGGCCCACAAAGGATGGACCGGTTGGAGCTCTGTGTATTCCCTACTGCTGGTGGACCTCCTGTTACCCCCACCAGCCCTGGTGAGGCACTGGCGGAAGGAGCCCTCACACAGCTGCCCACCTCTCCTGCATCCCAACCTGAGGAACTTGTGGCAAGGACGTGCAGCCCCCTGCACCTGCGCTCCCCTAGCCCGCACACCCTCCTGACCACCCTATCGGACCCCCTACACCAGCGCGCCCTGCCCGGGATGCGCCGCAGCCAATCTGCAGACCACCAACAGCACCCTTCCTCTTCCACCTCCTCGTGCCACGCCTCGCTGCCACTACCTTCCCAACCCTGTGCCGCCCATTCGCCTGGACGCAGGAAACTTCCTGCCATTCCAGCTACTGCTGCAAACACCAAGTTCCCCTCAGTCATACGAATCACCCGCGCTCAGCTTCAGCAGCTGACGGCTCAGCGACCTTCTGTGCTGTCCTCCCAATCTGCATCTGACAGTGTTCCACTGGAGAGACGTGATACTGATAATGGTAACAATGAGATCCATCCTCAAGACAACACAGCTGACATCAACTCCCCACAGGAGCAGGCTGCTTTCCAGCCCACCAGCCCCTCTAATGTTGAGGGGGATCCTTTGCTAAATGGGAACAGCCCTCAGAAACCTTCAAGCCCAGTGCCAAGCCTGGTGCCGTCTCCACGCACACCTCCGTCTCTGCATAGCCCAGTTATGATGAACAGCTGTCTTACACCACCTTTAGACACACAGAGAGACAACAACGAGCAGCTTCCACTCCACTCCATAGAGCCCAACCAGTGCTCTCTGGAGGAGGGAAAGGAAGGTGGTCCTACAAGAAATGGCTCCTCTTCTCCAGCCTCCATTCCTAAACAAGACCCCAGTCATCGGCACAGCCGTATCCCAGTATTAGAACCATCTAGCCTTCTGGACCCACCACCTGGATCTGCTAAAGAGAAGTTGTTCCAGAGGAGGGTTCACCACATTCCAGTTTCCCCCTCTGCTTCCCCGACGTTATCCTCCGACAGGCGTGTCATCATGGCTGCCATGCAGCGGGACCAGATTTCTTCTGCCTCTTCTGAACGCTCTCAAGATGACGAGTCACTTCTGGGTTCTCGTTCCGATCGTCATGGAGATGATGCTCCATCACTGTCCTCTTCCTCCAGTCCACTTTTACGGAAGAGCAAGATACCACGGCCAGTTACCCCTACTACAGCTAGTGCGGAAACCATCACTGCACACTTAGTGCCCCGTCCACCACCAGGAAAACCTCCTAGCCGCTCCACTGTGGATGCAAGGCTACGGCGGTACAGGATTTCTACCGGAAGCACCAGTGACTCAGACCTGCTGACCTGTTTGGCCCAGCTAATGGCCAGCTCACCTCGTGGATCTCCGCACCACAGCTGCTCATCCCCCCAACATGTGGGCACGAGGCATGTGTTCGTCAGTCCCATTGCTGCTCACCACCTCCACCAGCGCAGCTCTAGCGCCTCTCCCCGCAGTTCCTCCTCACTGCAACGCTCCGTCAGCTCTTCCCCATCCCGCCACGAGCATCGCGGGGGCTGTCTTGCCCGCAGCCGCTCTCCACCCAGTTTCTCTGGCTCCCCTCCTCTGCGCCGCTCTTATCCTCACACACAGGAAGGATGCTGCGGGAGACAGGCCCGCGCCGCCACCATGCACACCCAACGGGGCAAATCGGCCATCCGCGAGCTCAGGTGCTTGAGCAAGCTGAGCAGATAGTCAACTACAAGTTTTAGACACTAGCAGAAGAAGTGAATGAGTGAAAGTGGGATATTTGAGTTTCAAGTGTCCCAATTTCTATATAGCTAAAAAA

Function

symbol description
ttbk2a Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in cilium assembly and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in several cellular components, including ciliary basal body; ciliary transition zone; and nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 11. Orthologous to human TTBK2 (tau tubulin kinase 2).
ttbk2 Enables kinesin binding activity and protein serine/threonine kinase activity. Involved in several processes, including negative regulation of microtubule binding activity; negative regulation of microtubule depolymerization; and negative regulation of protein localization to microtubule. Located in several cellular components, including ciliary transition zone; cytoskeleton; and cytosol. Implicated in spinocerebellar ataxia type 11.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08815 TTBK; tau tubulin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000315_01023268_01038848.mRNA True 3769 mRNA 0.54 16 1023174 1038848

Neighbor

gene id symbol gene type direction distance location
CI01000315_01010057_01020955 NOXRED1 coding downstream 2219 1010036 ~ 1021965 (-)
CI01000315_01001912_01007018 TMED8 coding downstream 16156 1001849 ~ 1007018 (-)
CI01000315_00991692_00998577 NA coding downstream 24597 991437 ~ 998577 (-)
CI01000315_00973185_00985720 ALDH6A1, MMSA, ALDH6A1.L coding downstream 37454 973028 ~ 985720 (-)
CI01000315_00936612_00946276 NA coding downstream 76090 936170 ~ 947084 (-)
CI01000315_01082437_01097575 NA coding upstream 43096 1081944 ~ 1097575 (-)
CI01000315_01103575_01108954 TMEM206 coding upstream 64368 1103216 ~ 1108954 (-)
CI01000315_01166953_01176898 HHIPL2 coding upstream 127795 1166643 ~ 1176898 (-)
CI01000315_01181862_01186477 SUSD4 coding upstream 142764 1181612 ~ 1186477 (-)
CI01000315_01190449_01191486 NA coding upstream 150875 1189723 ~ 1193147 (-)
G447322 NA non-coding downstream 87402 935525 ~ 935772 (-)
G447313 NA non-coding downstream 148633 874324 ~ 874541 (-)
G447265 NA non-coding downstream 185069 835302 ~ 838105 (-)
G447266 NA non-coding downstream 193892 828532 ~ 829282 (-)
G447262 NA non-coding downstream 196097 826865 ~ 827077 (-)
G447293 NA non-coding upstream 9912 1048760 ~ 1049187 (-)
G447336 NA non-coding upstream 29445 1068293 ~ 1071750 (-)
G447337 NA non-coding upstream 35681 1074529 ~ 1149461 (-)
G447300 NA non-coding upstream 110735 1149583 ~ 1152126 (-)
G447357 NA non-coding upstream 121284 1160132 ~ 1160432 (-)
CI01000315_00272349_00277104 NA other downstream 746023 272344 ~ 277391 (-)
G447377 NA other upstream 290160 1329008 ~ 1330164 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location