G447265


Basic Information

Item Value
gene id G447265
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 835302 ~ 838105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU513427
TTTGTTTTCCGAAGATGAACGAAGGTCTTACAGGTGTAGAACGACATGAGGGTGAGTAATAAATGACATAATTTTTATTTTTGGGTGAACTAACACTTTAAACTAAAGTGACAGCATATACATTTAGAATGGTAAAAAATAATTTCAAAATGAAATAGTACTGCTCTTTTGAACTTTATATTCATCAAATAATAGTGAAAAAATCTTTCATAGTTTCCACAAAAATAGCAGCACAACAATTTTCAGCATTGATTTTAAAAGTTGTTTTAAATTGTAATAATATTTCACAATATTTTATATCAAATAAATGCAGCCTTGGTGAGCATAAGAAAAAAAATCTTATCAAACTTTTAAACGGTAGTGTACATTCCTGGGGGGATAAAATGGGCGAAGCCCAAAATGACTACACAAAGATTAATAACCACAAATTACTGCAAGGAAATTAGCAAGAATTAAGCAAATGCACTCCTTTAAAAGTCAACTGTCTCAGAAAAACATCAAAGACGGAATAACGTTTTTGGCAGAATATGGGAAGTTTGATTCAGAGTGGTTCAGCAGAGTTGTCTGGAGTGATGAATCACAATGAAACACGAGTTGCATGGTGATGCTCCAGAGTGGTGTCTTTGAAGATTTGGTGAGAAATATAATAATAAATGCATCTCTACCACAGAGAATCATTGAGGAAGAGATGTCATTATGTGGGAAGCTTTTTTAGCTGCTGGTATTAGCAAAGATTAAAGATATAGAAAGACGGTTTACTCCTATTAGAGAAACTGCAACACGCAATATCGCGGAGTATGTCCCGCCTTCTAAGTAAAAGAGCCAATCACTAATTGACAATCAATAGACAATCACTAAGTCATTGCGTCACTGCATCTGCCGTTAGAAGCTCCGGTTCCCACATAAACCTGAGACTCGCGCATAGGACTGCACATGCGCATTGGCTAGTCTAGCCTGAAAAATACGTTTTTTTAACGCTATTTGAGCATAAGAAACAACATTTATGGGACAGTTCATGTCAGATTTTGTTGCTGATTCAAAATATGTTATGTAATTGTGAGTTCGCCAAGCAGTTTTTGAGATTTCAGGATTCCCCCATTCAGATAGATAGGACTTGGTCTTGGATACCCGAAATAGCTGCCCGGGGGCGTTGCAAATATGGCCGCCGACTGAACAGACTTTTCTTGAAAGGGACTTTGGTATTGTTGAGCTACTTCACTGTAAAAAGTCAATTAATGCTTTGGAGTATAAGAGAATATTGCAGAATGGCTCGCTTCCCACCAATGAAAAGTTATCTAAAGAGGAATGATCAGATGTTATTTTTCAACAATACAATGCTACTGCCCAAATTGCAAAGACAACCAAGAAGTGGCTCATGTTTTGGCCTGGTCGGAGTCCAGATTTGAACCCTATAAAGAATATTTGGTCTCACATTAAACTCAAACGAACTGGAAGACATTTTTCAACTACTCATGAACTGTTTGAAGCCACACAGCTTAAATATTTAAAGAAAACAAGGGAAGGCTTTTATGTACTAAATTACTTTATCTACAGTATTTTTGCAATTCTTACTAATTTCCTGAGCAGTGATTTGTGGTTAAAAAGTTACAAATTTGAATTCCCATTTAAACATTACAGTTACAGTAGCTATGTTAACTTCTTTTAAATTCAACTCATTTTGAGGTAGCAAAACTCTGTTTGCTACCTCAATCTAAAGTCAATTCAATTAAAAAAATTTAGATACTGAATTGGAACTATTTATACTTAAAAACATCATAGAATAGTGCATAAGTGTGGGAATTGGGACGCACCTTATCAGTTGCAGTTCTGGCGCCCCCATCCCAATAGGTGTGTTCTGTTCAACTTTAAACGTTTGCATGCATTTTAAAGTAGTTAAACGTTTTTCGCATGCTGTTCTGACATAAGTTTTTCTGAGCACGTAAACCCAAAGCACATGCAAGGCAAGGCAAGGCAATTTTATTTGTATAGCACATTTCATACACAATGGTAATTCAAAGTGCTTTACATAAAGAAGAACCAAATACATAAGAATAAAAATAAATGGAACGCATAAGAAATAAAAATAACAGTAAAAACAGAGAATACCACTATCTGGATGGAAGAGTTAGGAAGTTTCAGGGAGTTTTTTGTTGTCCGTCAGAGCGGATCTAAACGGATCTATCCATCAGAGCGGATCTAAATGGATCTTCCTCACGCTGGAGGGATAACTGTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGAAAAATATTTATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCTTACAGACAAATCTTCCTGGACTAACTCTATCCAGAGCTCCATCCAGGGATAACTCTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGATCTATCCATCAGAGCAGATCTAAATGGATCTTCCTCACGCGGAGGGATAACTGTAAAAATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCCTTACAGACAAATCTTCCTGGACTAACTCTGTCAGAGCTCCATCCAGGGATTACAAATGCTTACTTCCTAATTCTCCCAGCTCTTTCAACCAGACAGCAACATTTAAAATGCATTAAAAGTCAGAAATAAAAAGATGATACATAAAAGATTGATATAAAATGCATTAAAAATGAAATAAAAACAAGAAAAAGAATTTGCATATCAAAAGCCTGTCACACAGCACGCAAGTACTGAACTACGTTTTCTTTCGCATCTTATTGTGCTTAAACTGTCAAATACACATAAGGTTTACATAAACACA
>TU513428
TTTGTTTTCCGAAGATGAACGAAGGTCTTACAGGTGTAGAACGACATGAGGGTGAGTAATAAATGACATAATTTTTATTTTTGGGTGAACTAACACTTTAAACTAAAGTGACAGCATATACATTTAGAATGGTAAAAAATAATTTCAAAATGAAATAGTACTGCTCTTTTGAACTTTATATTCATCAAATAATAGTGAAAAAATCTTTCATAGTTTCCACAAAAATAGCAGCACAACAATTTTCAGCATTGATTTTAAAAGTTGTTTTAAATTGTAATAATATTTCACAATATTTTATATCAAATAAATGCAGCCTTGGTGAGCATAAGAAAAAAAATCTTATCAAACTTTTAAACGGTAGTGTACATTCCTGGGGGGATAAAATGGGCGAAGCCCAAAATGACTACACAAAGATTAATAACCACAAATTACTGCAAGGAAATTAGCAAGAATTAAGCAAATGCACTCCTTTAAAAGTCAACTGTCTCAGAAAAACATCAAAGACGGAATAACGTTTTTGGCAGAATATGGGAAGTTTGATTCAGAGTGGTTCAGCAGAGTTGTCTGGAGTGATGAATCACAATGAAACACGAGTTGCATGGTGATGCTCCAGAGTGGTGTCTTTGAAGATTTGGTGAGAAATATAATAATAAATGCATCTCTACCACAGAGAATCATTGAGGAAGAGATGTCATTATGTGGGAAGCTTTTTTAGCTGCTGGTATTAGCAAAGATTAAAGATATAGAAAGACGGTTTACTCCTATTAGAGAAACTGCAACACGCAATATCGCGGAGTATGTCCCGCCTTCTAAGTAAAAGAGCCAATCACTAATTGACAATCAATAGACAATCACTAAGTCATTGCGTCACTGCATCTGCCGTTAGAAGCTCCGGTTCCCACATAAACCTGAGACTCGCGCATAGGACTGCACATGCGCATTGGCTAGTCTAGCCTGAAAAATACGTTTTTTTAACGCTATTTGAGCATAAGAAACAACATTTATGGGACAGTTCATGTCAGATTTTGTTGCTGATTCAAAATATGTTATGTAATTGTGAGTTCGCCAAGCAGTTTTTGAGATTTCAGGATTCCCCCATTCAGATAGATAGGACTTGGTCTTGGATACCCGAAATAGCTGCCCGGGGGCGTTGCAAATATGGCCGCCGACTGAACAGACTTTTCTTGAAAGGGACTTTGGTATTGTTGAGCTACTTCACTGTAAAAAGTCAATTAATGCTTTGGAGTATAAGAGAATATTGCAGAATGGCTCGCTTCCCACCAATGAAAAGTTATCTAAAGAGGAATGATCAGATGTTATTTTTCAACAATACAATGCTACTGCCCAAATTGCAAAGACAACCAAGAAGTGGCTCATGTTTTGGCCTGGTCGGAGTCCAGATTTGAACCCTATAAAGAATATTTGGTCTCACATTAAACTCAAACGAACTGGAAGACATTTTTCAACTACTCATGAACTGTTTGAAGCCACACAGCTTAAATATTTAAAGAAAACAAGGGAAGGCTTTTATGTACTAAATTACTTTATCTACAGTATTTTTGCAATTCTTACTAATTTCCTGAGCAGTGATTTGTGGTTAAAAAGTTACAAATTTGAATTCCCATTTAAACATTACAGTTACAGTAGCTATGTTAACTTCTTTTAAATTCAACTCATTTTGAGGTAGCAAAACTCTGTTTGCTACCTCAATCTAAAGTCAATTCAATTAAAAAAATTTAGATACTGAATTGGAACTATTTATACTTAAAAACATCATAGAATAGTGCATAAGTGTGGGAATTGGGACGCACCTTATCAGTTGCAGTTCTGGCGCCCCCATCCCAATAGGTGTGTTCTGTTCAACTTTAAACGTTTGCATGCATTTTAAAGTAGTTAAACGTTTTTCGCATGCTGTTCTGACATAAGTTTTTCTGAGCACGTAAACCCAAAGCACATGCAAGGCAAGGCAAGGCAATTTTATTTGTATAGCACATTTCATACACAATGGTAATTCAAAGTGCTTTACATAAAGAAGAACCAAATACATAAGAATAAAAATAAATGGAACGCATAAGAAATAAAAATAACAGTAAAAACAGAGAATACCACTATCTGGATGGAAGAGTTAGGAAGTTTCAGGGAGTTTTTTGTTGTCCGTCAGAGCGGATCTAAACGGATCTATCCATCAGAGCGGATCTAAATGGATCTTCCTCACGCTGGAGGGATAACTGTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGAAAAATATTTATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCTTACAGACAAATCTTCCTGGACTAACTCTATCCAGAGCTCCATCCAGGGATAACTCTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGATCTATCCATCAGAGCAGATCTAAATGGATCTTCCTCACGCGGAGGGATAACTGTAAAAATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCCTTACAGACAAATCTTCCTGGACTAACTCTGTCAGAGCTCCATCCAGGGATTACAAATGCTTACTTCCTAATTCTCCCAGCTCTTTCAACCAGACAGCAACATTTAAAATGCATTAAAAGTCAGAAATAAAAAGATGATACATAAAAGATTGATATAAAATGCATTAAAAATGAAATAAAAACAAGAAAAAGAATTTGCATATCAAAAGCCTGTCACACAGCACGCAAGTACTGAACTACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU513427 False 2804 lncRNA 0.36 1 835302 838105
TU513428 True 2743 lncRNA 0.36 1 835363 838105

Neighbor

gene id symbol gene type direction distance location
CI01000315_00804433_00812661 NA coding downstream 21614 804058 ~ 813688 (-)
CI01000315_00741317_00742390 NA coding downstream 91743 741102 ~ 743559 (-)
CI01000315_00708672_00717317 SLC35F4 coding downstream 117985 708602 ~ 717317 (-)
CI01000315_00698591_00702796 NA coding downstream 132273 698360 ~ 703029 (-)
CI01000315_00661758_00677566 EXOC5.L, EXOC5 coding downstream 157736 661638 ~ 677566 (-)
CI01000315_00839331_00842291 ZDHHC22 coding upstream 700 838805 ~ 842291 (-)
CI01000315_00884860_00885026 NA coding upstream 46553 884658 ~ 885026 (-)
CI01000315_00903374_00907477 NGB2, NGB1, NGB coding upstream 64062 902167 ~ 907477 (-)
CI01000315_00912164_00920580 NA coding upstream 73783 911888 ~ 920580 (-)
CI01000315_00936612_00946276 NA coding upstream 98065 936170 ~ 947084 (-)
G447266 NA non-coding downstream 6020 828532 ~ 829282 (-)
G447262 NA non-coding downstream 8225 826865 ~ 827077 (-)
G447231 NA non-coding downstream 128077 706496 ~ 707225 (-)
G447225 NA non-coding downstream 150192 684866 ~ 685110 (-)
G447219 NA non-coding downstream 184830 650176 ~ 650472 (-)
G447313 NA non-coding upstream 36219 874324 ~ 874541 (-)
G447322 NA non-coding upstream 97420 935525 ~ 935772 (-)
CI01000315_01010057_01020955 NOXRED1 non-coding upstream 181861 1010036 ~ 1021965 (-)
G447293 NA non-coding upstream 210655 1048760 ~ 1049187 (-)
G447336 NA non-coding upstream 230188 1068293 ~ 1071750 (-)
CI01000315_00272349_00277104 NA other downstream 558151 272344 ~ 277391 (-)
G447377 NA other upstream 490903 1329008 ~ 1330164 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035197 NA non-coding NC_007118.7 CM002891.2 60848763 ~ 60849488 (-)
rainbow trout (Oncorhynchus mykiss) G35966 NA non-coding NC_048565.1 CM023219.2 33942726 ~ 33942972 (-)
eurasian perch (Perca fluviatilis) dbndd1 dbndd1,LOC103136566 misc NC_053114.1 CM020911.1 28046759 ~ 28073479 (-)
mexican tetra (Astyanax mexicanus) G30335 NA non-coding NC_035899.1 CM008302.1 63263950 ~ 63288134 (+)