RNA id: TU513427



Basic Information


Item Value
RNA id TU513427
length 2804
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G447265
representative False

Chromosome Information


Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 835302 ~ 838105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTGTTTTCCGAAGATGAACGAAGGTCTTACAGGTGTAGAACGACATGAGGGTGAGTAATAAATGACATAATTTTTATTTTTGGGTGAACTAACACTTTAAACTAAAGTGACAGCATATACATTTAGAATGGTAAAAAATAATTTCAAAATGAAATAGTACTGCTCTTTTGAACTTTATATTCATCAAATAATAGTGAAAAAATCTTTCATAGTTTCCACAAAAATAGCAGCACAACAATTTTCAGCATTGATTTTAAAAGTTGTTTTAAATTGTAATAATATTTCACAATATTTTATATCAAATAAATGCAGCCTTGGTGAGCATAAGAAAAAAAATCTTATCAAACTTTTAAACGGTAGTGTACATTCCTGGGGGGATAAAATGGGCGAAGCCCAAAATGACTACACAAAGATTAATAACCACAAATTACTGCAAGGAAATTAGCAAGAATTAAGCAAATGCACTCCTTTAAAAGTCAACTGTCTCAGAAAAACATCAAAGACGGAATAACGTTTTTGGCAGAATATGGGAAGTTTGATTCAGAGTGGTTCAGCAGAGTTGTCTGGAGTGATGAATCACAATGAAACACGAGTTGCATGGTGATGCTCCAGAGTGGTGTCTTTGAAGATTTGGTGAGAAATATAATAATAAATGCATCTCTACCACAGAGAATCATTGAGGAAGAGATGTCATTATGTGGGAAGCTTTTTTAGCTGCTGGTATTAGCAAAGATTAAAGATATAGAAAGACGGTTTACTCCTATTAGAGAAACTGCAACACGCAATATCGCGGAGTATGTCCCGCCTTCTAAGTAAAAGAGCCAATCACTAATTGACAATCAATAGACAATCACTAAGTCATTGCGTCACTGCATCTGCCGTTAGAAGCTCCGGTTCCCACATAAACCTGAGACTCGCGCATAGGACTGCACATGCGCATTGGCTAGTCTAGCCTGAAAAATACGTTTTTTTAACGCTATTTGAGCATAAGAAACAACATTTATGGGACAGTTCATGTCAGATTTTGTTGCTGATTCAAAATATGTTATGTAATTGTGAGTTCGCCAAGCAGTTTTTGAGATTTCAGGATTCCCCCATTCAGATAGATAGGACTTGGTCTTGGATACCCGAAATAGCTGCCCGGGGGCGTTGCAAATATGGCCGCCGACTGAACAGACTTTTCTTGAAAGGGACTTTGGTATTGTTGAGCTACTTCACTGTAAAAAGTCAATTAATGCTTTGGAGTATAAGAGAATATTGCAGAATGGCTCGCTTCCCACCAATGAAAAGTTATCTAAAGAGGAATGATCAGATGTTATTTTTCAACAATACAATGCTACTGCCCAAATTGCAAAGACAACCAAGAAGTGGCTCATGTTTTGGCCTGGTCGGAGTCCAGATTTGAACCCTATAAAGAATATTTGGTCTCACATTAAACTCAAACGAACTGGAAGACATTTTTCAACTACTCATGAACTGTTTGAAGCCACACAGCTTAAATATTTAAAGAAAACAAGGGAAGGCTTTTATGTACTAAATTACTTTATCTACAGTATTTTTGCAATTCTTACTAATTTCCTGAGCAGTGATTTGTGGTTAAAAAGTTACAAATTTGAATTCCCATTTAAACATTACAGTTACAGTAGCTATGTTAACTTCTTTTAAATTCAACTCATTTTGAGGTAGCAAAACTCTGTTTGCTACCTCAATCTAAAGTCAATTCAATTAAAAAAATTTAGATACTGAATTGGAACTATTTATACTTAAAAACATCATAGAATAGTGCATAAGTGTGGGAATTGGGACGCACCTTATCAGTTGCAGTTCTGGCGCCCCCATCCCAATAGGTGTGTTCTGTTCAACTTTAAACGTTTGCATGCATTTTAAAGTAGTTAAACGTTTTTCGCATGCTGTTCTGACATAAGTTTTTCTGAGCACGTAAACCCAAAGCACATGCAAGGCAAGGCAAGGCAATTTTATTTGTATAGCACATTTCATACACAATGGTAATTCAAAGTGCTTTACATAAAGAAGAACCAAATACATAAGAATAAAAATAAATGGAACGCATAAGAAATAAAAATAACAGTAAAAACAGAGAATACCACTATCTGGATGGAAGAGTTAGGAAGTTTCAGGGAGTTTTTTGTTGTCCGTCAGAGCGGATCTAAACGGATCTATCCATCAGAGCGGATCTAAATGGATCTTCCTCACGCTGGAGGGATAACTGTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGAAAAATATTTATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCTTACAGACAAATCTTCCTGGACTAACTCTATCCAGAGCTCCATCCAGGGATAACTCTACTCAACTTTGTTGTCCGTCAGAGTGGATCTAAACGGATCTATCCATCAGAGCAGATCTAAATGGATCTTCCTCACGCGGAGGGATAACTGTAAAAATATTTGTCAGGTAGCTGTGCGTTTAAACAGTACCCTTACAGACAAATCTTCCTGGACTAACTCTGTCAGAGCTCCATCCAGGGATTACAAATGCTTACTTCCTAATTCTCCCAGCTCTTTCAACCAGACAGCAACATTTAAAATGCATTAAAAGTCAGAAATAAAAAGATGATACATAAAAGATTGATATAAAATGCATTAAAAATGAAATAAAAACAAGAAAAAGAATTTGCATATCAAAAGCCTGTCACACAGCACGCAAGTACTGAACTACGTTTTCTTTCGCATCTTATTGTGCTTAAACTGTCAAATACACATAAGGTTTACATAAACACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU513429 lncRNA downstream 6020 828532 ~ 829282 (-) True G447266
TU513423 lncRNA downstream 8225 826865 ~ 827077 (-) True G447262
TU513392 lncRNA downstream 128077 706496 ~ 707225 (-) True G447231
TU513383 lncRNA downstream 150192 684866 ~ 685110 (-) True G447225
TU513377 lncRNA downstream 184830 650176 ~ 650472 (-) True G447219
TU513477 lncRNA upstream 36219 874324 ~ 874541 (-) True G447313
TU513487 lncRNA upstream 97420 935525 ~ 935772 (-) True G447322
TU513450 lncRNA upstream 181861 1073717 ~ 1074369 (-) True G447287
TU513456 lncRNA upstream 210655 1048760 ~ 1049187 (-) True G447293
TU513510 lncRNA upstream 230188 1068293 ~ 1071750 (-) True G447336
CI01000315_00804433_00812661.mRNA mRNA downstream 21614 804058 ~ 813688 (-) True CI01000315_00804433_00812661
CI01000315_00741317_00742390.mRNA mRNA downstream 91743 741102 ~ 743559 (-) True CI01000315_00741317_00742390
CI01000315_00708672_00717317.mRNA mRNA downstream 117985 708602 ~ 717317 (-) True CI01000315_00708672_00717317
CI01000315_00698591_00702796.mRNA mRNA downstream 132273 698360 ~ 703029 (-) True CI01000315_00698591_00702796
CI01000315_00661758_00677566.mRNA mRNA downstream 157736 661638 ~ 677566 (-) True CI01000315_00661758_00677566
CI01000315_00839331_00842291.mRNA mRNA upstream 700 838805 ~ 842291 (-) True CI01000315_00839331_00842291
CI01000315_00884860_00885026.mRNA mRNA upstream 46553 884658 ~ 885026 (-) True CI01000315_00884860_00885026
CI01000315_00903374_00907477.mRNA mRNA upstream 64062 902167 ~ 907477 (-) True CI01000315_00903374_00907477
CI01000315_00912164_00920580.mRNA mRNA upstream 73783 911888 ~ 920580 (-) True CI01000315_00912164_00920580
CI01000315_00936612_00946276.mRNA mRNA upstream 98065 936170 ~ 947084 (-) True CI01000315_00936612_00946276
TU512771 other downstream 558151 273823 ~ 275584 (-) True G446682
TU513576 other upstream 490903 1329008 ~ 1330164 (-) True G447377

Expression Profile