RNA id: TU513450


Basic Information

Item Value
RNA id TU513450
length 653
lncRNA type read_through
GC content 0.34
exon number 1
gene id G447287
representative True

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 1073717 ~ 1074369 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGTGAGTGTGTATATGGGGAAAGAATGAGGACAAACCTGCCAATGTTTGATTTTGTTCCACAAGTGTCTAAACTCTTGCAGGTTAAGTCTTCCGGTTCCATCCATCTGTGTGATAAGGATTAAGAAAACTTTGCTTGCAATATTCTACACTATCACCTCTGCTTTAAAATGAAATCTAATGTAATTCTAACAACGAAACTATGAGTTATGATGCCTAAATTGACATGTGAATTCAACTGATAAGAATATGAATTCCTAACTTACTGTTACAAGGTTGAAATGTAGCGTTCTATGCTTTCGTTTATCATTAGTAATGAAAAATTACTATAATTGGCACATAACAAGACTCTAACCATATTAACTGGTGGAAACAACTGACATGGGAAAAAAAAGGCACAAATGTTTTGGATAAATGCTTCAGAAGGGATTTACCATTACCAACATTATGCTAACATAATATTTTTGCTTGATAGCACAAAACAGATAGCAAATGTATGTAATCTTGATACAAAGGATACATCCATGAGGGCGATCATGCTTCTACAGCTCTCTCGACTGAAGCCTTCAGTGTGTATGTCCTTGTCTGTAAATAGCAGATAGTTTCTTGAAGACAGTATATAGAAAAAACAAAACCCAGAAACAATCAACAAAAAAAAAAAGTGTTCTTGTGCTTCGATGTGCCTAAATAAGTTTTGCTTTGGAATATATATATATATAGGGCAGGCTTTCAGAATCTAGAGTCACAAGCTATTTATTTTAAATTTTTATGCAGTGCTTCTGGTATCCCACACCATTTTTATCATTTCCAGTGACAATTACACTTTTTTCCGCTGGTTATTTGCAGGCCCGAACAGAATCTGTGCCTGCTATACTTAACATAAAACTCTACAGACGTCCTTAAAACTAGATAGCATTTTTGAATATCAAATATTTCGTTAATTTGATTTCTGCTGTCAGCTACCAATGAGATTTGAATTCTTTCAGATCCATCAAACATTTACTATTGTTAACCCATTTTACAGATTCTAAGCAAAAGTCTGCAGATTCTCTCTGGGTGTCTTGGTTTGCATATCAAAAAATGACTACTCTCCTTGCTTACAATATCAACAATCAGTCAAAAACTAAATGTTAAAGGAGAAGGTTTTAAAATTGCAATACTTTTACATTTTCTTAATTTAAGGTAAGAGTACTAATACTGATACAGTAGCCAATATCACTGACTAAACATAGTTTTATTGTATGTGCCACATGATATTCAGTTGAAAAAAATTGAATGAAGATTACTTTTACATTACAAAACCTCAGCATTTTTTAGCTGCAATTTGCCATTTGTCACTCCTATTGAAGTTTTATGTGTTTCATAATTCCTTAATAATAATAATAATACCTATTTTTAAAAAGCATGCAGCTAATTCCCTTCAAAGACTGGAGCATTAACATACACAGCCGTCTTCCTTTTCCGCTTGTAATATAGCTTCCACTTCCCATAGAAGGCCAACACTTTGCATGAGCTAGAGAGAAATAACAAAATGCCGCAATGTACAATAAACACAGCTTACAAGTTTTCATATACCTGGAGTTTGTAGCCTGATAAGTACTGTCAGCTTGTAAATAGGGACTTCATATTTGTTTTCCTATCCGTCCTCTGGTTTGTGTTTTAGGTCATTACCCTCGTTTTAACTTTATATCAGCATTTGCAGAACGAATGTTTGTGTACCTACTCAATCCTTGGCTGCATTTGTGTATGCCGGTGTAATCTGGTAGGTGATTTACCAGAGCATGTGGGACATCAGCAAATGGCATAGTAAAAATATTAATATTTTCTCATGGCAGATGAAATTTAGGGATTAAAAAAAGCATTAGTAGCATGATTTCCCCCCCAATATAGCATCACTTTAGTTGTACACTATTGACAGTTGCAATCACAACCTTTTATATTAAAATAAGATCTCCACTCTGCCCTAAGACACTGTCTGGTCAAGTCACCTTAAAACTGCTGTTTTCTACCATCACTGCAATAAATCCTTTGGCCGAAGTAGATTACAGGCAAATTTCAACCTGTCAAAGTTTTATGTTCATCAGATCACTGTTAAATAACAAAGAAAACAGCACAGAATTTTCCTGGACACCCTGAAATGCTGTTTTTCATTTCGTTGACAAACCCCTTCACCTTCTGTAAAATAACATCAATCTATTTAGCGTTTAGTGAAATGCTAGTCTAGTATACTGTAATCTAGTATACTGGTTTTATCTCTTCTAAACCAGACCATTCAAAAACAGATTTACACATCATTGAGTTTCTTTTCTTAACTTGTTTGTCCCATGTGTTTGTCTATATTTTGAACAGTTAAACTGCACATTATTGTTATAGCAATGGACTGAAAGTTTATCTGTGTAGTACGATGATTTTTCATCTTGAAGGATCTGAAGGGAATGAACAAAACTAGAAAGTTTTCTCTATTACTGTTCTATTATTAATTGTCTCAAAATGACATAATGATGTAACAGTCTGAGAAAAGAAAACGATACATGATGATTAGTTTTGCATCTGTATCATTTTTATTTATCTTTTTTTTTTTTTTTACTGCATATTGTTGTTCACAATTTATGAAGTTAAATGTACAGTGTACAAAAGAATGTTATGGGGTGGG

Function

GO:

id name namespace
GO:0004735 pyrroline-5-carboxylate reductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513487 lncRNA downstream 84194 935525 ~ 935772 (-) True G447322
TU513477 lncRNA downstream 145425 874324 ~ 874541 (-) True G447313
TU513427 lncRNA downstream 181861 835302 ~ 838105 (-) False G447265
TU513428 lncRNA downstream 181861 835363 ~ 838105 (-) True G447265
TU513429 lncRNA downstream 190684 828532 ~ 829282 (-) True G447266
TU513512 lncRNA upstream 160 1074529 ~ 1149461 (-) True G447337
TU513463 lncRNA upstream 75214 1149583 ~ 1152126 (-) True G447300
TU513553 lncRNA upstream 85763 1160132 ~ 1160432 (-) True G447357
TU513554 lncRNA upstream 88543 1162912 ~ 1163138 (-) True G447358
TU513559 lncRNA upstream 100517 1174886 ~ 1175094 (-) True G447363
CI01000315_01001912_01007018.mRNA mRNA downstream 12948 1001849 ~ 1007018 (-) True CI01000315_01001912_01007018
CI01000315_00991692_00998577.mRNA mRNA downstream 21389 991437 ~ 998577 (-) True CI01000315_00991692_00998577
CI01000315_00973185_00985720.mRNA mRNA downstream 34246 973028 ~ 985720 (-) True CI01000315_00973185_00985720
CI01000315_00936612_00946276.mRNA mRNA downstream 72882 936170 ~ 947084 (-) True CI01000315_00936612_00946276
CI01000315_00912164_00920580.mRNA mRNA downstream 99386 911888 ~ 920580 (-) True CI01000315_00912164_00920580
CI01000315_01082437_01097575.mRNA mRNA upstream 7575 1081944 ~ 1097575 (-) True CI01000315_01082437_01097575
CI01000315_01103575_01108954.mRNA mRNA upstream 28847 1103216 ~ 1108954 (-) True CI01000315_01103575_01108954
CI01000315_01166953_01176898.mRNA mRNA upstream 92274 1166643 ~ 1176898 (-) True CI01000315_01166953_01176898
CI01000315_01181862_01186477.mRNA mRNA upstream 107243 1181612 ~ 1186477 (-) True CI01000315_01181862_01186477
CI01000315_01190449_01191486.mRNA mRNA upstream 115354 1189723 ~ 1193147 (-) True CI01000315_01190449_01191486
TU512771 other downstream 742815 273823 ~ 275584 (-) True G446682
TU513576 other upstream 254639 1329008 ~ 1330164 (-) True G447377

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU181268 True 255 lncRNA 0.32 1 CM030140.1 9169995 ~ 9170249 (+)
tiger barb (Puntius tetrazona) TU181268 True 2204 lncRNA 0.35 2 NC_056715.1 20984616 ~ 20986902 (+)