RNA id: TU513512


Basic Information

Item Value
RNA id TU513512
length 262
lncRNA type read_through
GC content 0.41
exon number 2
gene id G447337
representative True

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 1074529 ~ 1149461 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTTACAAATCTTTTGTTTCGAATCAGTGGTTCGGATTGCAAATCAAACTGCTAAAGTCACATGATTTTAGTAAAGAAGGCTTTGTTACGTCATAAGTGTTTTGAAATTTCAGTGGTTCACCACTGGGGGGCGTGACTTTAGCTGTTTGATAGACGCCCCGAACCACTGATTCAAAACACAAGATTTGTAAAGCTACGAAGCTTCATGAAGCAGTGCTCCGAAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU513450 lncRNA downstream 160 1073717 ~ 1074369 (-) True G447287
TU513510 lncRNA downstream 2779 1068293 ~ 1071750 (-) True G447336
TU513456 lncRNA downstream 25342 1048760 ~ 1049187 (-) True G447293
TU513487 lncRNA downstream 138757 935525 ~ 935772 (-) True G447322
TU513477 lncRNA downstream 199988 874324 ~ 874541 (-) True G447313
TU513463 lncRNA upstream 122 1149583 ~ 1152126 (-) True G447300
TU513553 lncRNA upstream 10671 1160132 ~ 1160432 (-) True G447357
TU513554 lncRNA upstream 13451 1162912 ~ 1163138 (-) True G447358
TU513559 lncRNA upstream 25425 1174886 ~ 1175094 (-) True G447363
TU513564 lncRNA upstream 45330 1194791 ~ 1195055 (-) True G447368
CI01000315_01023268_01038848.mRNA mRNA downstream 35681 1023174 ~ 1038848 (-) True CI01000315_01023268_01038848
CI01000315_01010057_01020955.mRNA mRNA downstream 53574 1010036 ~ 1020955 (-) False CI01000315_01010057_01020955
CI01000315_01001912_01007018.mRNA mRNA downstream 67511 1001849 ~ 1007018 (-) True CI01000315_01001912_01007018
CI01000315_00991692_00998577.mRNA mRNA downstream 75952 991437 ~ 998577 (-) True CI01000315_00991692_00998577
CI01000315_00973185_00985720.mRNA mRNA downstream 88809 973028 ~ 985720 (-) True CI01000315_00973185_00985720
CI01000315_01166953_01176898.mRNA mRNA upstream 17182 1166643 ~ 1176898 (-) True CI01000315_01166953_01176898
CI01000315_01181862_01186477.mRNA mRNA upstream 32151 1181612 ~ 1186477 (-) True CI01000315_01181862_01186477
CI01000315_01190449_01191486.mRNA mRNA upstream 40262 1189723 ~ 1193147 (-) True CI01000315_01190449_01191486
CI01000315_01196732_01198387.mRNA mRNA upstream 47073 1196534 ~ 1198387 (-) True CI01000315_01196732_01198387
CI01000315_01347633_01349527.mRNA mRNA upstream 198103 1347564 ~ 1349527 (-) True CI01000315_01347633_01349527
TU512771 other downstream 797378 273823 ~ 275584 (-) True G446682
TU513576 other upstream 179547 1329008 ~ 1330164 (-) True G447377

Expression Profile