CI01000315_00973185_00985720 (ALDH6A1, MMSA, ALDH6A1.L)


Basic Information

Item Value
gene id CI01000315_00973185_00985720
gene name ALDH6A1, MMSA, ALDH6A1.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 973028 ~ 985720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000315_00973185_00985720.mRNA
ATGGCAGCGACATTAATGCGTTCCCTTGTAAAGAAGAGGGTTCCTCTTCAGATGGGACGCATGTGCTACTCCTCCTCCTCTGTGCCCACCACCAAGTTGTTCATTGATGGAAAGTTTGTAGAATCCAAGAGTCCAGAATGGTTGGACATTCACAATCCTGCCACCAATGAGGTCATTGGTCGAGTGCCAAAGGCCACACACGAGGAGATGTTGGCCGCCGTGGACTCGTGCTCGCGGGCGTACCATACCTGGTCCGAAACTTCCATCCTGGCCCGCCAGCAGATCTTCCTTCGCTATCAGCAGCTCATTAAAGACAATATTAAAGAGCTGGCCAAGTTGATAACCCTGGAGCAGGGTAAAACCCTGGCTGATGCTGAGGGCGACGTGTTCAGAGGACTGCAGGTGGTGGAGCACACCTGTAGTATCACATCCCTTATGCTGGGTGAGACCCTCCCCTCTATCACTAAAGACATGGACACGTACACATACCGGTTGCCCATTGGCGTTTGTGCCGGTATTGCCCCCTTCAATTTCCCTGCCATGATTCCTTTGTGGATGTTCCCAATGGGCATGGTGTGCGGGAACACCTATTTAATGAAGCCCTCAGAGAGAGTGCCTGGCTGCGCCATGATGCTGGCCAAACTGCTGCAGGACGCTGGCGCTCCAGATGGAACATTAAACATAATCCACGGACAGCATGACGCTGTGAACTTCATCTGTGACCATCCCGCCATCAAAGCCATCAGTTTCGTTGGCTCCAACCAGGCTGGCGAGTACATCTATGAGAGAGGCTCCAAAAATGGCAAGAGAGTGCAGAGCAACATGGGGGCAAAGAATCACGGAGTGGTGATGCCTGATGCCAACAAAGAGAACACACTCAACCAGTTGGTAGGTGCTGCTTTTGGAGCAGCAGGTCAGAGATGTATGGCACTTTCCACGGCTATCCTCATAGGAGAAGCCCGAAACTGGTTGCCTGAACTGGTTGAACGTGCAAAGAGTCTCCGTGTCAATGCAGGTGACCAGCCCGGAGCTGACGTGGGACCTCTTATCTCACCTCAGGCCAAAAAGCGAGTGAACAGCCTTATTCAGAGTGGTGTGGATGAGGGCGCCAAGGTGCTGCTTGACGGCAGGAATGTGAAAGTCAAGGGTTACGAAAACGGGAACTTTGTAGGACCAACCATCATTAGCAATGTTACGCCTGACATGATGTGCTATAAGGAGGAGATATTTGGACCTGTATTGGTGGTTCTGGAGGCTGACAGCTTGGATGAAGCCATCAAAATTGTCAATAAGAACCCATACGGCAACGGAACAGCCATCTTCACCACCAACGGTGCCGCAGCACGTAAATACACCCATGAAGTTGATGTTGTCCGGAGGCTGAAATTAAACTCAAAAGGGATCCCTTGCAACCTGTTGATCTGGTGGTTATGCAAAAACGGCCCCGTTTTACCCCGTTTGTTTGCCAGTGGCGAGCCTCTATGCCGTGTGTTTGCGATTCACATGCTGGAGTACATGGCACGGGCCATGTGCTGAGCTGGCCTCTCAAAACCCCTGCACACAAGAACCTCCTTTTGCTTTTTTTTTTGTTTTTTTCCTCCGTCCACTCCCTCACGAGTCACCTTCGGCCAGAAGGCTCAAATTGTGCAAGAAGCTCTGCCAGTTTCCAGTCTCACCCCACTCCAAAAACAAA

Function

symbol description
aldh6a1 Predicted to enable malonate-semialdehyde dehydrogenase (acetylating) activity and methylmalonate-semialdehyde dehydrogenase (acylating) activity. Predicted to be involved in thymine catabolic process and valine catabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and ventricular zone. Orthologous to human ALDH6A1 (aldehyde dehydrogenase 6 family member A1).
mmsa malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

GO:

id name namespace
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity molecular_function

KEGG:

id description
K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000315_00973185_00985720.mRNA True 1693 mRNA 0.51 11 973028 985720

Neighbor

gene id symbol gene type direction distance location
CI01000315_00936612_00946276 NA coding downstream 25944 936170 ~ 947084 (-)
CI01000315_00912164_00920580 NA coding downstream 52448 911888 ~ 920580 (-)
CI01000315_00903374_00907477 NGB2, NGB1, NGB coding downstream 65551 902167 ~ 907477 (-)
CI01000315_00884860_00885026 NA coding downstream 88002 884658 ~ 885026 (-)
CI01000315_00839331_00842291 ZDHHC22 coding downstream 130737 838805 ~ 842291 (-)
CI01000315_00991692_00998577 NA coding upstream 5717 991437 ~ 998577 (-)
CI01000315_01001912_01007018 TMED8 coding upstream 16129 1001849 ~ 1007018 (-)
CI01000315_01010057_01020955 NOXRED1 coding upstream 24316 1010036 ~ 1021965 (-)
CI01000315_01023268_01038848 TTBK2A, TTBK2 coding upstream 37454 1023174 ~ 1038848 (-)
CI01000315_01082437_01097575 NA coding upstream 96224 1081944 ~ 1097575 (-)
G447322 NA non-coding downstream 37256 935525 ~ 935772 (-)
G447313 NA non-coding downstream 98487 874324 ~ 874541 (-)
G447265 NA non-coding downstream 134923 835302 ~ 838105 (-)
G447266 NA non-coding downstream 143746 828532 ~ 829282 (-)
G447262 NA non-coding downstream 145951 826865 ~ 827077 (-)
G447293 NA non-coding upstream 63040 1048760 ~ 1049187 (-)
G447336 NA non-coding upstream 82573 1068293 ~ 1071750 (-)
G447337 NA non-coding upstream 88809 1074529 ~ 1149461 (-)
G447300 NA non-coding upstream 163863 1149583 ~ 1152126 (-)
CI01000315_00272349_00277104 NA other downstream 695877 272344 ~ 277391 (-)
G447377 NA other upstream 343288 1329008 ~ 1330164 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012347 aldh6a1 coding NC_007128.7 CM002901.2 45071531 ~ 45104750 (-)