CI01000315_00903374_00907477 (NGB2, NGB1, NGB)


Basic Information

Item Value
gene id CI01000315_00903374_00907477
gene name NGB2, NGB1, NGB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000315
NCBI id null
chromosome length 1797778
location 902167 ~ 907477 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000315_00903374_00907477.mRNA
GAGGAGCTATGGCTCGTAACATGTGCTATTAAAGCAGTGGAGATCAGAGATGTTTCCATTCTGTCCTTATATGTTTCCATATACTGTCCATATGAGCCCAAAATCACAGGGATGAGAATTTGGGGACAGTTACAGTGTGAATTGAATAAGGAAAGATCTATATGTTTTTTGGAAAATGCAGAAGATTGCCAAAAAGATATTGAGTGCAAGAAGCATTTGTCAGAAAGCGTTGGCATTAAAATTGATTGCAATGCATCACAAATAGATTGTAAAATAAATGTATTTGAAAAGCTTTTTGATCCTATAGTCCATCATGCACGCTCCTCTGATAAGTCTCATTTGTCCTTGGCGAATGATATCTGCAAATATTGGCACTTCACAGGGGGGTCATACCTGAAGACTGAACTCTGGAAGTCTGGAAATGGGAATTCAGGAGGGAACACAGCATTACTGAGGGTCACAATGGAGAAACTCTCTGAAAAAGATAAAGGTCTGATCCGGGACAGCTGGGAGAGTCTGGGGAAGAACAAGGTGCCACATGGAATTGTTATGTTCACGAGGTTATTTGAGCTGGATCCAGCATTACTTACTCTCTTCAGCTACAGCACAAACTGTGGGGTCGCACCTGAATGCCTCTCCAGCCCAGAGTTCCTCGAGCATGTCACCAAGGTCATGCTAGTGATCGATGCAGCTGTGAGCCATCTTGATGACCTACATACATTGGAGGAATTCTTGTTGAACCTGGGCAGGAAGCACCAGGCAGTTGGGGTGAAGACCCAGTCCTTTGCTGTGGTTGGAGAGTCCTTGCTCTATATGCTTCAGTCCAGCCTAGGTCCAGCCTACACAACACCACTACGCCAGGCCTGGCTCAATATGTACAGCATCGTGGTATCAGCCATGACCAGAGGATGGGCCAAGAATGGTGAACATAAGTCCAACTGAGAATGAGGTAGATGTGAGATTCACACTGGAACACCCAGTTTCTGTGGAGGCCACCAGATGTATCTTCTCATGTATCAGAAGATACATCCACCAGATGTATCTTCTGAGTTGTGTTTTGGCTCCCTGAACAGTCCTAACTTTGGTAGCTTGGTCTAACTGTAGACTGAGATTGTAGTTAGAGATAACGAAGCCAATAAGGTTGAAGTATGCTTTTCAAGAGTCCAGGACATAGATAGTTTATGGTTGAAACTTCAAAAGCAAAAGTGGCTTTGTACATATAGTAATCACTAAATGTATTTCCTCAAACTATCTTAAATGACTGTCTTGATGTATTGGTGTTTCATGTGAGCGTAAAACAGAGGTTTGACTATGCACATGTGAGCTTGGTCAACTTGGAAAAAGTTGTTTTATTCTGTCGCCTCTTGGAATCAATTTAGATAAAGGCCTTTAGAGCCACTACAATTTCACTTTAACCTTAAATTACACAGAATTAATTGTATAATCTTGCCTGTGCTGTGTTAGTTTAAGTTTAGTGATGTTCAGTAAATTATCTGAGCATGAACATAGTAGTATTTGGCAATATGGTCCAAATGATAGTGTCAGACAATAAGCAATCAGTAGCCATAATGTTTTGATGCCATCCAAATGTTCATGAGAAATTTTGTTTGCCACATTCTTCAACCATTATCAGTATTTCTGGCGATGAAAGTAAATGACGAGAACTGTTACATCCGAAATAGCTTTTGGAATTTTTAGACTGTTAATTTATGAACCTGTGCCATGTCATAAGTTTACATTTCCATTGTATGGGATTATAATCTAAGCATTCTACTCCAAGGCTTACTTACGAAAGACTTGTGTAGACTGTTACTTACCATAAAGTGACTGTTATATCATAGAAACCAGATGATTTGTTCACTTATTTACAATTGTAGATAGTCAAAAAGTGTTTATGCTAAATGATCCACTCCAGTGGGCATTGGCTATATATAATAATTTTTATTTCAAATTTTGTTTTTCAGAGTTTTTGTTCGCAAACTTTCTGAGTATTTTTAAAAAATAGTAAATTGCATTAGTTGGCTTATTACAACCGTGTAAGTTAAGAACATACACACTCTTATCTAAGATAAGAATATTTGTTGCCATAATTATGAGCTATAGAAAAACGTTAAAAGCGATGATAACCGTTTTTGCTGCTATCATTAAA

Function

symbol description
ngb Enables nitrite reductase activity and oxygen binding activity. Acts upstream of or within response to hypoxia. Predicted to be located in cytoplasm and perikaryon. Is expressed in blood; brain; and eye. Orthologous to human NGB (neuroglobin).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000315_00903374_00907477.mRNA True 2149 mRNA 0.39 6 902167 907477

Neighbor

gene id symbol gene type direction distance location
CI01000315_00884860_00885026 NA coding downstream 17141 884658 ~ 885026 (-)
CI01000315_00839331_00842291 ZDHHC22 coding downstream 59876 838805 ~ 842291 (-)
CI01000315_00804433_00812661 NA coding downstream 88479 804058 ~ 813688 (-)
CI01000315_00741317_00742390 NA coding downstream 158608 741102 ~ 743559 (-)
CI01000315_00708672_00717317 SLC35F4 coding downstream 184850 708602 ~ 717317 (-)
CI01000315_00912164_00920580 NA coding upstream 4411 911888 ~ 920580 (-)
CI01000315_00936612_00946276 NA coding upstream 28693 936170 ~ 947084 (-)
CI01000315_00973185_00985720 ALDH6A1, MMSA, ALDH6A1.L coding upstream 65551 973028 ~ 985720 (-)
CI01000315_00991692_00998577 NA coding upstream 83960 991437 ~ 998577 (-)
CI01000315_01001912_01007018 TMED8 coding upstream 94372 1001849 ~ 1007018 (-)
G447313 NA non-coding downstream 27626 874324 ~ 874541 (-)
G447265 NA non-coding downstream 64062 835302 ~ 838105 (-)
G447266 NA non-coding downstream 72885 828532 ~ 829282 (-)
G447262 NA non-coding downstream 75090 826865 ~ 827077 (-)
G447231 NA non-coding downstream 194942 706496 ~ 707225 (-)
G447322 NA non-coding upstream 28048 935525 ~ 935772 (-)
CI01000315_01010057_01020955 NOXRED1 non-coding upstream 112489 1010036 ~ 1021965 (-)
G447293 NA non-coding upstream 141283 1048760 ~ 1049187 (-)
G447336 NA non-coding upstream 160816 1068293 ~ 1071750 (-)
G447337 NA non-coding upstream 167052 1074529 ~ 1149461 (-)
CI01000315_00272349_00277104 NA other downstream 625016 272344 ~ 277391 (-)
G447377 NA other upstream 421531 1329008 ~ 1330164 (-)

Expression


Co-expression Network