CI01000325_07689808_07742619 (NHSL1B)


Basic Information

Item Value
gene id CI01000325_07689808_07742619
gene name NHSL1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 7689808 ~ 7742619 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_07689808_07742619.mRNA
ATGATGAGGGACAAGCGTTCTGGGTCTTTTAGGATGGACAGGGACAAGACAGACAAAGCCGCCCCGATCTCTCGTGCTCTCAGCTGGCTGAACGTGTCCTCGCTGTCACAGCAGACCCGTAAACTGTTCCGCAGCCAGAACAACCTCCATAGACACTCCCACACTCCACATGGAGTGGATGAAGATGATGATGACTGGGTGTATGAACCCCAGCACTACAGAGCTGTATCTAATCTGGATGAAGAGAAAAAGTGGACTGTGCACTACACGGCTCCATGGCACCAGCAGGAGAACGTCTTTCTGCCGGGCTCCAGACCAGCCTGCGTGGAAGACCTGCACCGCCAGGCCAAAGTTAACTTGAAAACAGCTCTCAGAGAATGTGATAAACTGAGGAAAGATGGTTTCCGTAGCTCACAGTACTACTCACAGGGGCCCACCTTCTCAGGCTCCTCAAACTCGCAACATGAGGATGAGGACATCGAAGGTGATGAAGCTGATAAAAAGTCCACAGCATCTTCAGGAGAGGAAGAGAAAGACTCCTGCCAAATGAGAGCACAGAATTCCACACAGGAGGAGGGGGTTGAGGTTGATGGACAAATGTCACGGTCCAAAGCCCCGCCCCTGCCCACTCCAGAAGAGAAGATGAGGCAGCAGGCTCAGGCTGTTCTCACAGATATTGTCCCCATCGATGTCACAGGGGAGACGTTTGACAGGCAGGCCAGCATCCGCCGCTCCCTAATAAACACTGACACTCTGGTCCGCCGGCCCAAGAAGGTTAAGCGAAGAAAGACTATTTCAGGGGTGCCTGACAGCGTCCAACAGGAACTAGCGGCTAAGGGGCGTGGAGGAGAGCTTCGGCCACAGTCCATGTTTATCCCTGGACAGTATTCAACACTTGGGCGAGTCATGAACAGGAATTCAACTCTCCATCGATCTATAACAAAAGATTCTGGCTGCCAGACTGAGGAGGTGAAAATTGTCCCACCCTCTGTGAGGAGAATACGAGCTCAGAAGGGCCAAGGAATTGCTGCTCAGATGGCCGGCATCTCCACTTCTGCCACTAACATCTCTTCTGTTTATGATGGGAGCTCACCTGGAAGTTCTGTTGTTGTAATGGCACCACAGTTTGGCAATGATATCCAACGTTTTCACAGCTTGCCACGAGGTGCACGGGTCTCACTAAATGCAGAGCCCCTTTACAGTAGCACCCCTTTTAGGCAAGAAGACTCTGCTGCAAAAGCACCTCAGCAGATTGGAAAATTACAAGTAGATGATACTGTGGTGCACATGAGGAATGCCCCCAGGGTATGTACCCAAGCCCGGCCAAAATCTCAGGAGGTGAGAGGTACTCAAAAGGATTGGGGATCTGTCTCAGGTCCAGCCTGTGTAGTTTCTCCACATGCAGCCTACTCAACCTCACTTATACCTAATGCTACTCTGTCATGTTCTGCTGAGGTTATTGCACTTCACACCACATCGAGTCCAGGCCAGAGCCCACTTGCTGGGTCACCATACACTAGAGCTAGACCTCTTAGCATGGTCTCAGCTGTCAATAGTGAGAGCACTAGTAGTGTAGGCACAGGATCGCACACACCAGAAGCAGGCATGAAGGATACCTGTAGTGAGACTGGCCAGTCCGATAGCAGTTTGCACAGCCACAGCACCATTGCTGCAGGAACATTGTCTTCAGATGAGCAATGGATTTATGACACTCCTGAGAATGTCTTGCCCAGAAGGACACTGACTTCCAGTTGCTCAACACCCATAAATAATCTCTATAGTAGCCTTGAACGCTCCTCAAAAGGCACAGACTCTAGTTCACTCTACTCTATGGACAATGATGGCTACTACACATCCATGCATCTGGATTCAGGCCTTAGGTCAAGGAGCCAGGGTAGTGGCCATGGTCATGGTATAGGAGGAAGAGCAGCAAGACACAGTATGTATGAGTGCCTGGGTCAGCAAGAAGACAGAACCAGCTTGTACAGTGACCACTCACTGTCACGTTCCATCTCTCTACGCAAGCCTAAGAAACCACCTCTTCCACCAGCACGCACAGACTCTCTACGACGAAAGCCTAAGAAAACCAGCTCTCCCACTGCCAATATTGTAGGGCCGGATATTAGCAATGGTTCTCTTCTCAATGAGTCATTGATTGCCACGCTCCAACAGTCACTTCAGAATGGGCTGAAAGGCAAAGGGTCCTCCACCTCACCGTCTCACAGTCCTTGTAGCGATTATGAGGACCCCTGGATGCTTCGTCCCAGGAGCCAGAGCAGCATCAGTGCAGGCAGCAGTGGTGTATCAGCAGCAGGGATGGCTCATGTGTACTCCATCTGTCATGTCACACCTTCTCATAGTGATACTAGTAGCCTCCGTTCTGATTATGCAGACTCTTGGGGCTACTACATGGATTATCCTCGTCCATCTGGAGATCAAACACAGTCACCATGCACCAATTCATTTTCTGCTGGACAAGTGGGTGAGATGGCAAATGGAAGAGGCCTCCACAATGGTAACCAGGCTACTCTTCCTCCTGCTCAGGAAGGAAGTGTGAAGCCCAGAGCAGGCACCTCATCACCAGACAGGGTACATCGGTTGACTTCTCCATCAAGTGGATACTCAAGTCAATCCAATACTCCAACAGCTGGCACTCCTGTCCCCTCCTTTATGAGATGCATGTCCCCATCAGGCAGCAAGCCCAAACCCAGAGTGCCTGAAAGAAAGTCATCCTTGCTCTCATCTGTATCCATATCCTCTTCTTCCACCTCTCTTTCTTCTAACACTTCTGATTCCAATAGGAACAATATTCCTCCTCCACCTCCTCTTCCAGCTGCCCCTGTGGCTCTTGTACCTTTCAATCCTCCATCCTTTCCTCCTCCCCTTGCGCCCTCCAGCCCTGTGTGCACTGCAGACGAGAAGTTTCCTCCTCCACCACCTGCTTTACCCACCACCCCCCATCAACAAGCATCCATGAGCCCTACTTACATCAATTCTTCCCCTGAATTTCCACCACCTCCACCTCCAGAAGTGTTGACAGACCCTGCCTTATCATGCCTCAATAATTCTTTCAGCCCTCCACCTCCACCACCACCACTGCCTGCTTGTTCCACCATCCCTGCTTATTCTCTACCCCAAAATCAACTCCTATCCAGTATGACACCACCTACACCTTCTTCTGCTTGCTTGAAGGAAATTAAGGGTAGCCTAAAACCAGTGAACTCAGAAAGGAGACCAGTGTCGCCTCACTCTGAGCGGCCTAGTAAGGTTGGCATGCCTCTGATCACCCCATTTGCTCTGCAGAGTGTGCAACTTCGGCCAGCAAAGCGGCCAGAAAACAATGAAGTTAGCCAGTTGGCCAGACCCCAAACACCAGAGAAACCTCAAAAACCAGGGAATCCCACAGCTCCTCAGGTTTCTTCAGTACCTCCAAATTTAAGGCCATCATCTCCAGAGAAAAAACTCTCCATCCAGCATAGCCAGGATAGCTATGTTGAAGCACAACCTGACTGTGATGTAAAATCACATTCTGAACCAACATCCTACCTTACAAATGGGTACATAGATCTTGGCAAGGTTAAGGCCACAGCTGAAGTAGATGGTCTAGATACTGCCCTCTCATCACCTGCAGAAGCACCACAAAACACTACACCCAAGAAAAAGCCTCCTCTGGTTTCCAAAAAGCCCACGTTTTCTCTCACCTTTTCTTCAGTGGATCATGTCAGTGATTTGCTGAGTGCTCAGAAAGACGTTAACATCTCTACGACTACACCTGAAGGTCTGGACCCCACACCTGTGCCAGAACAGGAAGAGACAACTGAGAAGGATAGCATTGGTATTTCTGCACCTTCTGAGGAGATAAGAGACATTTCTCCCACAAATTGTGAAGCTCAGGAGTCCTCCCAGACTTCTGGTACCATCATTCTTGATGCAGACATGGGTACCATTGAAGCAAATAATGAAGAAGAGGGAGAAGAAGAAGAAGATGATGATGATGATGATGTAACCAGCAGCACAGGATCTTTTGGATCTAAAGATGATGAAAGTGGAGAGGTGTTTGAGTCCAGCACATTGGACGTTGCTCAATCTCCCAGCATCAACGGTGACAGCTGTGGGGACATGGTGACCCCCACTCGGCCCCGCACCACAGAGGACCTGTTTGCTGCCATTCACAGGTCAAAGCGGAAGGTCCTGGGGCGCAAGGAATCTGAAGAGGACCGTTCACGAGGTCCTCTTTCCCCACCGGTCACCCCCACAGGAATGGCCCCCGCCTTGACCTCCTCCTTGCCACGGCAAACGGGCTCCATACAGCGCAGCCTACGCAAATCCCCGACCAGCAGTGACACCTTCAAGGCCCTCCTGCTGAAGAAAGGCAGTCGCTCCGAGACCAGCTTCCGTATGTCTGCCGCCGAAATGTTGCGCAGCACCGACCCGCGCTTTCAGAGGACTCGCTCTCTCGACTCCTCATTCGATCCAGCATCTCCGACGGGCGAGAGCCCCTGCTCTTCTCCAGGCCGGAACAAACGGGCATCCGAGGACTGGGCACGCAACGAGGGAATGTTCTCAACGTCCCCATCATTAATCGGGCCGAAGTACGGCCGATCCCGCACACCGCCCTCTGCCGCCAGCAGCAAGTACAACGCCCGCAGCCGGATCCTCAGTAGCCCCATGACAGTTATTTGCGAGAGGGATGGAGAACTCACTGACTGTGAAGACCCATGCCCTGTTTCTCCATCAAACATGCCCCTTCCCAACTCTCAGGACTCTAACAGCACTTTATGTGAACAGAGCAGCAGT

Function

symbol description
nhsl1b Enables protein heterodimerization activity. Acts upstream of or within motor neuron migration. Located in membrane. Is expressed in branchiomotor neurons; central nervous system; facial nerve motor nucleus; somite; and trigeminal motor nucleus. Orthologous to human NHSL1 (NHS like 1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_07689808_07742619.mRNA True 4797 mRNA 0.51 8 7689808 7742619

Neighbor

gene id symbol gene type direction distance location
CI01000325_07626395_07634972 ACBD3 coding upstream 54448 7626209 ~ 7635360 (+)
CI01000325_07620275_07621402 CCR6A coding upstream 67935 7620275 ~ 7621873 (+)
CI01000325_07604006_07618057 NA coding upstream 71697 7604006 ~ 7618111 (+)
CI01000325_07573712_07597027 MYT1LA coding upstream 92781 7573712 ~ 7597027 (+)
CI01000325_07556421_07561822 NA coding upstream 127911 7556180 ~ 7561897 (+)
CI01000325_07775362_07777824 SOD2.L, MGC80739, SOD2 coding downstream 32743 7775362 ~ 7778055 (+)
CI01000325_07870639_07909517 OTOFA, OTOF coding downstream 128020 7870639 ~ 7909826 (+)
CI01000325_07911751_07918447 PDIA6 coding downstream 169132 7911751 ~ 7918447 (+)
CI01000325_07939376_07954501 NA coding downstream 196671 7939290 ~ 7954531 (+)
CI01000325_07957635_07968589 SLC22A16 coding downstream 215016 7957635 ~ 7969871 (+)
G466452 NA non-coding upstream 190012 7499336 ~ 7499796 (+)
G466451 NA non-coding upstream 190569 7498618 ~ 7499239 (+)
G466330 NA non-coding upstream 497501 7191755 ~ 7192307 (+)
G466234 NA non-coding upstream 587881 7101582 ~ 7101927 (+)
G466308 NA non-coding upstream 658397 7031181 ~ 7031411 (+)
G466479 NA non-coding downstream 11575 7754194 ~ 7754549 (+)
G466490 NA non-coding downstream 45721 7788340 ~ 7788622 (+)
G466515 NA non-coding downstream 89728 7832347 ~ 7834377 (+)
G466517 NA non-coding downstream 93142 7835761 ~ 7840350 (+)
G466496 NA non-coding downstream 191039 7933658 ~ 7935181 (+)
G466219 NA other upstream 203401 7482036 ~ 7486407 (+)
G466227 NA other upstream 374996 7312083 ~ 7314812 (+)
G466236 NA other upstream 685153 7003617 ~ 7004655 (+)
G466137 NA other upstream 1070337 6617200 ~ 6619471 (+)
G466144 NA other upstream 1187830 6498766 ~ 6501978 (+)
G466752 NA other downstream 831497 8574116 ~ 8575210 (+)
CI01000325_08732866_08734588 NA other downstream 989895 8732514 ~ 8734758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location