CI01000325_07775362_07777824 (SOD2.L, MGC80739, SOD2)


Basic Information

Item Value
gene id CI01000325_07775362_07777824
gene name SOD2.L, MGC80739, SOD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 7775362 ~ 7778055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_07775362_07777824.mRNA
ACAGAAGCACACACTTCCTGACCTCCCGTATGACTATGGTGCACTTGAGCCTCACATCTGTGCTGAGATTATGCAGCTGCACCACAGCAAGCACCATGCAACCTATGTCAACAATCTCAATGTCACTGAGGAAAAATATCAAGAGGCACTGGCCAAGGGTGATGTGACGACCCAAGTCTCCCTTCAGCCTGCATTGAAATTTAACGGTGGTGGTCATATTAATCATACCATATTCTGGACAAATCTGTCACCGAATGGTGGAGGAGAACCACAGGGTGAGCTGTTGGAGGCCATTAAGCGTGACTTTGGCTCATTTCAGAAGATGAAGGAGAAGATGTCAGCTGCCACAGTGGCCGTTCAGGGCTCAGGCTGGGGCTGGTTGGGCTTTAATAAGGACAGTGGAAGACTGAGAATTGCTGCTTGCGCTAACCAAGACCCTTTGCAGGGCACTACAGGTCTCGTCCCACTACTTGGGATAGATGTCTGGGAGCATGCATACTATCTCCAGTACAAGAACGTTAGACCGGACTACGTTAAGGCCATCTGGAATGTTGTGAACTGGGAGAATGTCAACGAGCGTTTCCAAGCTGCCAAGAAATAAATTGCACCACACTTGGGGGTGAAAAAAGGAACACAGTGTCCATTTATACCTTCGAAGCGCACATAATCAGACCACATTACAACCACCAAACTCAACTGTGACTCTAGAGATGCTTTATGGTTCTTGACAAGCTCATTTTCCCATGCAGAATTGTGCAATGTAACTCGTAGCTTGCGTTTTTGTTGAGTCGAAATCAAGAATATGTACGTTTATGTTATCAGTACATGCAAA

Function

symbol description
sod2 Enables superoxide dismutase activity. Acts upstream of or within several processes, including neutrophil homeostasis; removal of superoxide radicals; and response to methylmercury. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; hematopoietic cell; musculature system; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); lipid storage disease (multiple); liver disease (multiple); and optic nerve disease (multiple). Orthologous to human SOD2 (superoxide dismutase 2).

GO:

id name namespace
GO:0045087 innate immune response biological_process

KEGG:

id description
K04564 SOD2; superoxide dismutase, Fe-Mn family

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_07775362_07777824.mRNA True 832 mRNA 0.47 4 7775362 7778055

Neighbor

gene id symbol gene type direction distance location
CI01000325_07689808_07742619 NHSL1B coding upstream 32743 7689808 ~ 7742619 (+)
CI01000325_07626395_07634972 ACBD3 coding upstream 140002 7626209 ~ 7635360 (+)
CI01000325_07620275_07621402 CCR6A coding upstream 153489 7620275 ~ 7621873 (+)
CI01000325_07604006_07618057 NA coding upstream 157251 7604006 ~ 7618111 (+)
CI01000325_07573712_07597027 MYT1LA coding upstream 178335 7573712 ~ 7597027 (+)
CI01000325_07870639_07909517 OTOFA, OTOF coding downstream 92584 7870639 ~ 7909826 (+)
CI01000325_07911751_07918447 PDIA6 coding downstream 133696 7911751 ~ 7918447 (+)
CI01000325_07939376_07954501 NA coding downstream 161235 7939290 ~ 7954531 (+)
CI01000325_07957635_07968589 SLC22A16 coding downstream 179580 7957635 ~ 7969871 (+)
CI01000325_08504398_08512325 NA coding downstream 725373 8503428 ~ 8513052 (+)
G466479 NA non-coding upstream 20813 7754194 ~ 7754549 (+)
G466452 NA non-coding upstream 275566 7499336 ~ 7499796 (+)
G466451 NA non-coding upstream 276123 7498618 ~ 7499239 (+)
G466330 NA non-coding upstream 583055 7191755 ~ 7192307 (+)
G466234 NA non-coding upstream 673435 7101582 ~ 7101927 (+)
G466490 NA non-coding downstream 10285 7788340 ~ 7788622 (+)
G466515 NA non-coding downstream 54292 7832347 ~ 7834377 (+)
G466517 NA non-coding downstream 57706 7835761 ~ 7840350 (+)
G466496 NA non-coding downstream 155603 7933658 ~ 7935181 (+)
G466539 NA non-coding downstream 202058 7980113 ~ 7981948 (+)
G466219 NA other upstream 288955 7482036 ~ 7486407 (+)
G466227 NA other upstream 460550 7312083 ~ 7314812 (+)
G466236 NA other upstream 770707 7003617 ~ 7004655 (+)
G466137 NA other upstream 1155891 6617200 ~ 6619471 (+)
G466144 NA other upstream 1273384 6498766 ~ 6501978 (+)
G466752 NA other downstream 796061 8574116 ~ 8575210 (+)
CI01000325_08732866_08734588 NA other downstream 954459 8732514 ~ 8734758 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017419 sod2 coding NC_007131.7 CM002904.2 30937934 ~ 30947547 (+)