CI01000325_09266964_09281814 (SMEK1, PPP4R3A)


Basic Information

Item Value
gene id CI01000325_09266964_09281814
gene name SMEK1, PPP4R3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9266624 ~ 9282062 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_09266964_09281814.mRNA
AGAGTCTCGGCTGCACACAGCAGCTAGCTGACCATCGCTAGACTGGTCAGAATAATCTTTCTGGACAGCATAAGTTTACTGTTATAGACCCCACAACAACATACTGCATCAGCGTCGAGACCGCTTGCCAGTGAATGCCATACATTTCAGCTTGAAGTTGACCGCAGATTCTGTTGCCTCTTGCAAGGCAAGGACATTGAGATTTATTGAATCAAAGGCAAAAGCCTATTTGAGAGTTACTTGCAAGGATGACTGACACTCGTAGACGAGTAAAAGTGTACACTCTGAATGAGGACCGCCAGTGGGATGATCGGGGGACGGGACATGTGTCATCCGCCTACGTGGAGAGACTGAAAGGCATGTCTCTCTTGGTGCGCGCCGAAAGTGATGGATCACTGCTGCTGGAGTCAAAAATAAACCCTAACACCGCCTATCAGAAACAGCAGGACACATTAATAGTCTGGTCTGAGGCTGAAAACTATGACCTGGCCCTCAGCTTTCAGGAAAAGGCTGGTTGTGATGAGATCTGGGAGAAAATATGTCAGGTCCAGGGAAAGGACCCCTCGGTAGACATCACCCAGGAGCTGATAGATGAGTCTGAAGAGGAGCGCTTTGATGACATGTCTTCTCCTGGCCTTGAACTTCCACCATGTGAGCTCTCCCGGCTAGAGGAGGTGGCCGAGCTGGTGGCCTCATCCTTACCGTCTCCGTTACGGCGGGAAAAACTGGCCCTGGCGCTAGAGAACGAGGGCTACATCCGCAAGCTGCTGGAGCTGTTTCGCGTGTGCGAGGACTTGGAGAACCGAGAAGGCTTGCATCACCTCTACGACATCATCAAAGGCATTTTCCTCCTCAACCGCACGGCGCTCTTCGAAGTTATGTTCTCCGAAGAATGCATCATGGATGTGATCGGTTGTCTGGAGTTCGATCCGTCGCTACCCCAACCACGGAGGCATCGAGAGTTCCTGACCACCACGGCACGGTTTAAAGAGGTCATTCCCATTTCAGACCCGGAGCTGCGGCAGAAGATTCACCAGACGTACCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACCCCCTCTGTCTTTGAAGAAAACATGCTGTCCACGCTGCACTCCTTCATCTTCTTCAACAAAGTGGAGATTGTTGGCATGCTGCAGGACGATGAGAAATTTTTGACTGAGCTCTTTGCACAGCTAACTGATGAAGCCACAGATGACGACAAGCGGCATGAACTGGTAAATTTCCTGAAGGAGTTTTGTGCATTTTCGCAAACGTTACAACCACAGAACAGAGATGCATTCTTCAAAACGCTTTCCAACATGGGAATCCTGCCAGCGCTGGAAGTTATTCTTGGCATGGATGATGTGCAGGTGCGTGGAGCAGCCACTGATATCTTCTCCTACCTGGTGGAGTACAACCCCTCCATGGTGCGAGAGTTTGTTATGCAGGAGTCTCAACAGAATGATGATGACATTCTGTTGATAAATCTGATCATTGAGCATATGATCTGTGACACGGATCCAGAGTTGGGTGGAGCTGTACAGTTAATGGGGTTGCTCAGGACGCTAGTGGACCCAGAGAACATGCTGGCAACTGCTAATAAAACAGAGAAGACTGAGTTCTTGAGTTTCTTCTATAAGCACTGCATGCATGTGCTCTCAGCTCCACTTCTTGCCAACACCACAGAAGAAAAACCCAGCAAAGATGATTTCCAGACGTGTCAGCTGCTGGCTCTGATCGTAGAGCTGCTCACTTTCTGTGTGGAGCATCACACGTATCACATAAAGAACTACATCATCAACAAAGACATCCTCCGCAGAGTACTGGTGCTCACTGCTTCGCAACATGCTTTCTTAGCTTTATGTGCTTTGCGTTTCATGAGGAAAATCATTGGCCTGAAGGACGAGTTTTATAACAGATACATTATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCTTTCCTCAACAATGGATCAAGATACAACCTCATCAACTCAGCCATTATAGAGATGTTTGAGTATGTCAGAGTGGAGGATGTGAAGTCCCTGACAGCTCATATCATAGAGAACTACTGGAAAGCCCTGGAGGACGTAGACTATGTTCAGACGTTTAAGGGACTGAAGCTCCGATATGAACAACAGAGAGAAAGACAGGACAACCCTAAACTTGACAGTATGCGGTCGATTCTGAGAAATCACCGTTTTCGCCGGGATGCGCGGACGCTGGAAGACGAGGAGGAGATGTGGTTTAACACAGATGAAGAAGACTTGGAGGACGGTGAAGCTGTGGTGCCGCCCTCAGATAAGATGAAGAGTGACGAGGACCTGATGGATCCCATCAGCAAGTTCATGGAGAGGAAGAAACTGAAAGATTCAGAAGAGAAGGAGGTGTTGACAGGGAAGGCGAGCCTCTCAGGACGGCAGAGCCCCAGTTTTAAACTCTCCTTTTCCAGCTCTCCAAAGCCTAGTCTGTCCTCTCCTCCAACCGCATCCCTCCACCCCGGTTCACCTGGTTCTCCAAGCTCTCCCGGGACAGGAGCCCGGAGCTCCCCACCTACGGCAGCTGTCACCACCAAGGGAGGTCTAGTGGGGTTGGTGGACTATCCTGACGATGATGAAGAGGACGAGGACGAGGAAGATGCAGATAGTAAAGAAGAAAGTCCTCCGCTGTCCAAGAAGTCCAAGCTGAGCTCCTAAAGCACTCCCTCTTCAATCAGCACAGTCATGCTCAAAGGGAGCTTCATCCAGAGACTATTGCAGCGCTCAGCCTAGAACTCAAAACTGAAACTAAATGAATGAATACATAAATGAATGGATAAATGAACGAATGCAGCCCCCCGCAGGAGTCCATGGGGCACCATGTGAGGAACGGAGAAATGGAGAGCAAGAGAGGGAGAAGATTCGGTCACAGAGCGAAAAGGTGAATGTCTCCACGTGGAGTTTGTCCAAGTGCCAATCTGCAAGAGAGAGAGACTTGTGAAACGGACGGAGAGATCGAAGACGAGATAAAACTGTGGTCTGGACAAAGAATAATAAA

Function

symbol description
smek1 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).
ppp4r3a Predicted to act upstream of or within positive regulation of gluconeogenesis and protein dephosphorylation. Located in cytosol and nuclear speck.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17491 SMEK, PPP4R3; protein phosphatase 4 regulatory subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_09266964_09281814.mRNA True 3045 mRNA 0.49 15 9266624 9282062

Neighbor

gene id symbol gene type direction distance location
CI01000325_08919961_09083730 NBAS coding downstream 182894 8919961 ~ 9083730 (-)
CI01000325_08701427_08704727 NR2E1 coding downstream 561897 8701300 ~ 8704727 (-)
CI01000325_08645444_08676032 NA coding downstream 590592 8644731 ~ 8676032 (-)
CI01000325_08609784_08639480 FOXO3, FOXO3B coding downstream 624585 8609624 ~ 8642039 (-)
CI01000325_08571807_08594165 NA coding downstream 671888 8568722 ~ 8594736 (-)
CI01000325_09286047_09286556 ERH.L, ERH, ERH.S coding upstream 3472 9285532 ~ 9286556 (-)
CI01000325_09288339_09296072 NA coding upstream 5970 9288032 ~ 9296126 (-)
CI01000325_09334619_09368476 ROCK2B coding upstream 52542 9334604 ~ 9368476 (-)
CI01000325_09400787_09422170 FAM102B, FAM102BB coding upstream 118725 9400787 ~ 9422170 (-)
CI01000325_09434932_09471529 NA coding upstream 152843 9434905 ~ 9471529 (-)
G468481 NA non-coding downstream 61777 9204570 ~ 9204847 (-)
G468467 NA non-coding downstream 88882 9177533 ~ 9177742 (-)
G468462 NA non-coding downstream 107060 9158746 ~ 9159564 (-)
G467978 NA non-coding downstream 179671 9086569 ~ 9086953 (-)
G467970 NA non-coding downstream 254369 9011924 ~ 9012255 (-)
G468460 NA non-coding upstream 48968 9331030 ~ 9333199 (-)
G468550 NA non-coding upstream 91929 9373991 ~ 9374349 (-)
G468551 NA non-coding upstream 93081 9375143 ~ 9375365 (-)
G468562 NA non-coding upstream 104392 9386454 ~ 9395538 (-)
G468545 NA non-coding upstream 297928 9579990 ~ 9581436 (-)
G467741 NA other downstream 569041 8679172 ~ 8697583 (-)
G467578 NA other downstream 1311432 7946345 ~ 7955192 (-)
G467570 NA other downstream 1649794 7615486 ~ 7616830 (-)
G465716 NA other downstream 3638456 5626213 ~ 5628168 (-)
G468702 NA other upstream 885037 10023665 ~ 10193979 (-)
G468823 NA other upstream 1034068 10316130 ~ 10316685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000099 ppp4r3a,LOC107726626,LOC107555622,LOC107698404,LOC107601285,LOC107726461,LOC107696138 coding CM030141.1 CM030141.1 3216712 ~ 3236877 (-)