G480761


Basic Information

Item Value
gene id G480761
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 634414 ~ 643423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU551696
CAGTGAGAGAGAATGGAGGGTTTGACAGAGTATCATGGCCCCATCAGTAAGAGCCAAGCAGAAGAGATCCTGAATGAAGCGGGCAGAGATGGCAGCTATCTGATCAGAGATAGCATGAGCTCAGCGGGGTCTTACTGCATTTGTGTGCTGTGTGCTGGATGGATTTACACCTACAGAGTTTTCAAACGAAAGGACGGCCTCTGGACAATAGCGGTGGCTCCTGGGATGAAGGAACGACTCTTTCGAAAACTCAGTAACCTCATTGATGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTCTGTATCCTGTGAACAAACCTAAACGCACCTAACCTAACCTAACACACAAGTAAAAAAAAACAAACAAAAAAACACCTCACTGTTTTTACCTGCTGTAAATGTATGCAAGGGTTTTTCTATGTTTGAGGAAATACCCCTGAATACAGGGGTGGGGGCTCTTAGTCCAAGAGTAGATTGTAGAAATGTTGTAAAAAAAAAAAAAATGATGTAAATTGTAAAAATGTATGTAAGTGTATTAGATATATCAGGAAGGAGAAAACAATAATGGTTGTTGCTTTTCAAATCAATATCAATATCAAAATTACAAATAATCAACAAGATAAAAATAACTGTAAGAAAAAAATGCCCTGCTAGAATATATATCAACCCTTGTGCGTTATTTGTGAATCACACTCAGGTTCTTTACAGTCAAAAGTGACCGGACACCTGAAATGTAACTTCTTATTTTTTCAGTAAAATCATTGTAATACATTTCTGTACAATGATATTTTTCTTTTTCATTTTGAGAGGGTTTTGTGGTACTAGTTAATATTTATGCAGTAATTAATATCCATTTTTCCCATTGATAATAAAAAAAAAAAAGATTTTTCAATTAATGCAGTATTTCAGGTTAAAATAGAGTCTAGGCCTTTAAAATCCATTTTTTTTGAAGGCAGATTAGCGCCATCTGGTGAGAGTATCGAAAGAAAACGTGTAATACTATGGTGTAACCACTAGATGCATGTACAGTAAGTTCTTTATGTGTGTGTGTGTGTGTGTTCGAGAGACACAGTGTGTGACTTTTGCATTTTGGGTATGTTACAATGTCTCCCTTTATTTTTGATTTATTGATTTTATTTCACATATTCTCAATTTTCAGTTAGTCTTACCAGGGAATTTCTCTATGTGTGTGTGTGTGTGTCTATTTTGCAATCTTGATATTTTAGAGATTCACCCCTTCACTATTGTGTGCTTTTTTTCTGCATTGTGGCTGCTTTGTAGATTGTACAAACAAAAAATTCTCTGTATTTCATATTTTTTCCATTTCCCATTCATTTCCTATGGTTGGTCATTTTGATCGAAGACCCTGAGTGTGACTTTTTTATTTTACGACCACTTAGCCTGTTCAAATCATGCCCTCAAGTTTTGTACCATTCCGATGAAGCTGTAAAAAATCAAAACATAAAATTCTACAGTCAGAAGTGATCGAAGGCCTCACTTAAATAACTGTCCATTCCCTACTGTGTTACATTGTACATATCTCTACTGTGTACTGTCAGTCTTTCTTCAATGTTTTCAGTTTTTTTTTTTTAGAATCACATTGAATTAGCTATAGATTCAACAATATTTATTCAGACAGCAACATTAAATATAGATAGCCAGCTATATATCACTACAGAGAAACCCATGAGAAAAATAGGCCTTGAACAATGTCAGAACTTTGACCATGATTGCTATCTTGTTTTCAGTCTAGTAATGAAAGTTTAATATTTCTGTATAAAACTGGTCTTTGCAAATTCTACTTTTAGTGACTGAACTGTAAAACAAAACTGTTCTGTTCATATTTTATACTGAAACTTCATTTAGCACCACACATCCTGCAATAATACTATCACACTAACATTAAAAACAAAATTGTTTTGATTTAAAAGAATTTATTGTAATGATATTCAGAGCCTTTCTGGTGTTATAAATAATAAAAAAAATCTATGTACAATTTACTTTTTTTTCTTTTTCTCTCCACAGTCACAAAAAATATTTGCAGAATAGACAATGTTCTATTTGAATCTTTGTGACTCTTTGAACTAATATAAATCATTGATTCCTCAGTGTTTGAATGCTCCACTCTCTTGAATGAATCACTCTGGAGTGAACAAGGGCTTCAGCTGTTCTGTGCAAATACTCAAACATAGTCGCAACACAGAAGAAAGGGTTAAATTTGCATTTTTATTTATAAAAAGGCCACTGCCCAAAGTACTTTGTTTTTAAATTAGGCTTGTTTAACAAACTGCATTAATCTGTGTACATAAAGCCTATCAGCCAAATATACACCACAGGAACTTGTTTGGCCAAAGAGAGGACACTGAAGTTTTTTTAGTACTTGACTTTTGAGAGAGGAAGATGATTTGATCATGAAAAAAATTACATATTCCTTTTTTTCCACTTCAGCAATGATTGTGATAATGACAAAGATGCAAACTAAGATAAAAAGAAAAATATTTTCGCCACAATTTTTTTCTTCGTGCAACATAATCGTACTTCAATTAAAATGAACATCTGCAAAATGTCAGAAACATAACGTGCCTTCAGAGCAACTCTCGCACAAATCTGTTATATTTGCACGCTCTAAAAATTCAGTCTAATGCATTTATCTCTTCACCTTATATTCAGTGCAAATATATATCTCAGATTAAGATTACAAAGCTTGATGGTACAGCATATCCACAGAATTCACAAGAAAATACATTTACTCCTAATTCTCTTGAGTGTCATGTATAAATAGTCCAGAATCTATAAACAGTCTACAATAGTCCATTAATGATATACAAGTCCATATCAAGAGTCCTACACACAGAACGTCTACCCACAGTGCTGCAGACTTTAATAGTTTGGAAAAGACAAAAATACCGTTCTTCAGCAGGTGATTCTTTCATTTCCTTACACATCTTCCTCCTCAGGCCTCCTACTAGTTTCGAGAGGGATCAGAAAAGGATAAATCCAAAACGTTGGAGCTTTGACACTCATTTAGAAACCGAAATGACAGACACGTGAACGGAGTTTCACATTAAGTGTACATCAAAAGCAACAGAAAAAGAGAGAAATCACGTGAGAATAAATAAAAAAGAGCAGCATATTCACTGTAAACTAGGACATGTTTATGCCACTGTGTTTATATCCTGGGGTATGTTTACAAGAATTCACCTCACAGGCATTAGCATTCAAGTTTTTGGCTCCTGCTAGCCAAACCCCTCCCTACCAAAAACATAAGTAAATAAAAAACAAAAATAAAATAATCAAAAAATAAATAATTGCATATAACTAAGGCATGTGATGAATACTGAAGTTGTTTATGTACGATATGTCTAAGCCCGTTTCAGGTGATCGTTTCTAGCAGACCAGGAAGGCACAATTTCCACATACATAATTTTTTTTAATTTCTACATTGGGAAAAGAAAAAAAAGAGCAAACTGTACAGTTTTAGCAAAAAAGAACAGATTTGTCTTCCACAGCAGCGGCGTAATTCTCTCAGCTTCGTCAACACCGATTAAGCAGAAACAACACAAGATGGTGGTGAGCTCTTGCCAAGACTCCAAACACTGTGAATCTCTTGCAGCCTAGGGGTTAAGTTTTGTGACACTTTTGAGTCAGATACTTCTCCGGGACTCTGTTGTGAATTTGACAGTTCCAGAGCTCTGTTGAAACGTTGGGTTCGTATGACATTGGGTGTCATTTGAACCGCGAGGGCCTGAAAACCTTCTACGCAAATCCTGGAATGCAAATCGACTGAAAATTTAGAAACTTTTAACAGCGCTCAATGAAATCACAAGGAAACCCCTCAGGTTTGCAAGATTTAATGCCATAACCAGTTTGACTTGACATTCCCATAAAGTCGGATGATTACTGTACACGCTCAAGTGAGAGAATCAGCATGTGTAGAGATGAAGACTCCTTAATGTATGTCCAGAACAGTCACAGGTGAATCGTTCTCTGCGCCTTTAGATTGGCAAGCAAGGCTTGTTCTTTAGTAAGAACGGTTAAGCCACTGTAAAACAAGAAAGACGAGAAAGAAAACCAAAAAACAGGAATCTGAACTTGCTAAGAGTGCATCAACGAATGCAAAATCAAAATCAATACCATCATTTGTCACATTTTAAAGGCAATAGAGTCTTTCTCACTTCGTTTGGTTGGGGTTCTAAAAAAAGCTGAAGAGATATGTGGTAGCTTGGAGTGTATAAAGGGGTGTGTTGGCGTGTAGAGGTGTGCTGAAGTGCCGCTGTTACCTGCGACCAGTTTCCACATGTCTGATCAGATGAATGTTGAAGGGGCTGTCTGCTAGCTCAGGGTGTTGTTCAACAGGCAGAGCGTAGAACCCATCATACCCTGAGACACGGCCCTCAGCAATAAGCTCATCCTTTTCTTTATCAGTCCATGACAAACTTCCGCCCTCACCCTCCAGGACCCTCTTCTGCTCCCGTAGCCATGCCCCTTGCACAGCTCGTATTCGCGCCGCCTCCAGCACACGCGTGCGTTCTTCCTCCGGCGATGCTCCATAGCGAATGTTAAAGCTAAGCGCCCCCTGCTGGAGCACAATGTCAGCGAATCGCCGCATTTCCCCTCCAACCATAGCACTTATCTGGGACACAGAGACGTTTACCCCGTTCTCCAACACTCTGACTCCGCCTCCGGCACCTCCACCAGCCACTCCCAAATCTGCCTCCAGTGGGCCAGCCTTGGTGAAATAGTGTGTGTCACGCCCTTCCACTGTGAAATGGAGGCCTCGCAGGTATATAGCACCGTTTAGTACAGCTGCCACGCGACGGCTGTCCTCGCTTGCCACGCCGATTATCTCAGTCGCCACCACTCCATCACGGACGGCGAATTTCACACCTTTGCCGAAAATTGAAGAAATGGCAGAGAAAATCGGCCTGCGGCCCTGCAGACCTCCGATTTTCCCATTAGCTGGCGTCATGGGGAGGCGATCCAATGAAATAAAGTTTTTCAAGTGCTTCTGAAGGTCACACTGGATGCC
>TU551697
CAGTGAGAGAGAATGGAGGGTTTGACAGAGTATCATGGCCCCATCAGTAAGAGCCAAGCAGAAGAGATCCTGAATGAAGCGGGCAGAGATGGCAGCTATCTGATCAGAGATAGCATGAGCTCAGCGGGGTCTTACTGCATTTGTGTGCTGTGTGCTGGATGGATTTACACCTACAGAGTTTTCAAACGAAAGGACGGCCTCTGGACAATAGCGGTGGCTCCTGGGATGAAGGAACGACTCTTTCGAAAACTCAGTAACCTCATTGATGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTCTGTATCCTGTGAACAAACCTAAACGCACCTAACCTAACCTAACACACAAGTAAAAAAAAACAAACAAAAAAACACCTCACTGTTTTTACCTGCTGTAAATGTATGCAAGGGTTTTTCTATGTTTGAGGAAATACCCCTGAATACAGGGGTGGGGGCTCTTAGTCCAAGAGTAGATTGTAGAAATGTTGTAAAAAAAAAAAAAATGATGTAAATTGTAAAAATGTATGTAAGTGTATTAGATATATCAGGAAGGAGAAAACAATAATGGTTGTTGCTTTTCAAATCAATATCAATATCAAAATTACAAATAATCAACAAGATAAAAATAACTGTAAGAAAAAAATGCCCTGCTAGAATATATATCAACCCTTGTGCGTTATTTGTGAATCACACTCAGGTTCTTTACAGTCAAAAGTGACCGGACACCTGAAATGTAACTTCTTATTTTTTCAGTAAAATCATTGTAATACATTTCTGTACAATGATATTTTTCTTTTTCATTTTGAGAGGGTTTTGTGGTACTAGTTAATATTTATGCAGTAATTAATATCCATTTTTCCCATTGATAATAAAAAAAAAAAAGATTTTTCAATTAATGCAGTATTTCAGGTTAAAATAGAGTCTAGGCCTTTAAAATCCATTTTTTTTGAAGGCAGATTAGCGCCATCTGGTGAGAGTATCGAAAGAAAACGTGTAATACTATGGTGTAACCACTAGATGCATGTACAGTAAGTTCTTTATGTGTGTGTGTGTGTGTGTTCGAGAGACACAGTGTGTGACTTTTGCATTTTGGGTATGTTACAATGTCTCCCTTTATTTTTGATTTATTGATTTTATTTCACATATTCTCAATTTTCAGTTAGTCTTACCAGGGAATTTCTCTATGTGTGTGTGTGTGTGTCTATTTTGCAATCTTGATATTTTAGAGATTCACCCCTTCACTATTGTGTGCTTTTTTTCTGCATTGTGGCTGCTTTGTAGATTGTACAAACAAAAAATTCTCTGTATTTCATATTTTTTCCATTTCCCATTCATTTCCTATGGTTGGTCATTTTGATCGAAGACCCTGAGTGTGACTTTTTTATTTTACGACCACTTAGCCTGTTCAAATCATGCCCTCAAGTTTTGTACCATTCCGATGAAGCTGTAAAAAATCAAAACATAAAATTCTACAGTCAGAAGTGATCGAAGGCCTCACTTAAATAACTGTCCATTCCCTACTGTGTTACATTGTACATATCTCTACTGTGTACTGTCAGTCTTTCTTCAATGTTTTCAGTTTTTTTTTTTTAGAATCACATTGAATTAGCTATAGATTCAACAATATTTATTCAGACAGCAACATTAAATATAGATAGCCAGCTATATATCACTACAGAGAAACCCATGAGAAAAATAGGCCTTGAACAATGTCAGAACTTTGACCATGATTGCTATCTTGTTTTCAGTCTAGTAATGAAAGTTTAATATTTCTGTATAAAACTGGTCTTTGCAAATTCTACTTTTAGTGACTGAACTGTAAAACAAAACTGTTCTGTTCATATTTTATACTGAAACTTCATTTAGCACCACACATCCTGCAATAATACTATCACACTAACATTAAAAACAAAATTGTTTTGATTTAAAAGAATTTATTGTAATGATATTCAGAGCCTTTCTGGTGTTATAAATAATAAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU551696 False 5036 lncRNA 0.39 3 634414 643423
TU551697 True 1990 TUCP 0.34 3 634414 640377

Neighbor

gene id symbol gene type direction distance location
CI01000339_00629012_00632222 NA coding upstream 2052 629012 ~ 632362 (+)
CI01000339_00620788_00628381 NA coding upstream 6033 620788 ~ 628381 (+)
CI01000339_00608255_00608718 NA coding upstream 24950 608255 ~ 609464 (+)
CI01000339_00585149_00589325 BMP10 coding upstream 44337 584959 ~ 590077 (+)
CI01000339_00563492_00576878 ARHGAP25 coding upstream 56383 563492 ~ 578031 (+)
CI01000339_00787610_00792293 NA coding downstream 144080 787503 ~ 792351 (+)
CI01000339_00967161_00982676 NA coding downstream 323515 966938 ~ 982828 (+)
CI01000339_01056819_01058832 SHISA2 coding downstream 413276 1056699 ~ 1058983 (+)
CI01000339_01072565_01078927 ZC3H12B coding downstream 429142 1072565 ~ 1079035 (+)
CI01000339_01103817_01114804 MOES, MSN, MSNA, MSN.L coding downstream 459236 1102659 ~ 1114902 (+)
G480776 NA non-coding upstream 16926 617260 ~ 617488 (+)
G480775 NA non-coding upstream 17368 616754 ~ 617046 (+)
G480771 NA non-coding upstream 22575 611523 ~ 611839 (+)
G480769 NA non-coding upstream 28510 605507 ~ 605904 (+)
G480766 NA non-coding upstream 41732 592375 ~ 592682 (+)
G480786 NA non-coding downstream 6694 650117 ~ 654206 (+)
G480790 NA non-coding downstream 35718 679141 ~ 680290 (+)
G480798 NA non-coding downstream 41306 684729 ~ 685541 (+)
G480800 NA non-coding downstream 48840 692263 ~ 695639 (+)
G480819 NA non-coding downstream 88863 732286 ~ 768998 (+)
G480663 NA other upstream 456431 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 556822 69245 ~ 93266 (+)
G481321 NA other downstream 645898 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 931111 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 1553177 2196307 ~ 2198809 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 2177337 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 2444370 3088110 ~ 3091633 (+)

Expression


Co-expression Network