XLOC_013991 (cpne4b)


Basic Information

Item Value
gene id XLOC_013991
gene name cpne4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19028633 ~ 19173234 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027919
CTCACTATATGCCTGTATGGGGATTAAATGTAATTTGCAGAACTAACCGCCAGAGTGCAGGGTTACACTGTATTTGCGCCATGTACTTCCTCTCCAGCGTTGACAGTAGGACTAAACAGTGAAGTTAAGTGGAGTGCGCGCGCGTGCCCTGCTCTTATGTGGAGAGAGGATCCTGCAGGTCGGACTATCCATCACCTTTAACGCTCAACCCGATGGAGCTGCATTTTTTTATGACGGCTGAAAATCTAAACATGGAATCAGATGGAAAATGAGTCCAGTGCGTAAACTGCACTCAACACAATCTTAAAACTGAGGAACTTTTTCTCGCATACCTTGGGATTTGTTCTTATACTTAAAACAGTGGaaacagaacacaaaaacacaaaatgagTAACATCTACGAATCTGCTGCCACCACACTGGGCATCTTTAATAGCCCATGCCTGACAAAAGTGGAGCTCCGTGTCGCCTGTAAAGGAATATCTGACCGGGATGCTCTATCCAAACCTGACCCCTGTGTCGTCCTCAAGATGCAGTCCCATGGACAGTGGTTTGAGGTGGATCGGACAGAAGTGATTCGCAGCAGCATCAGTCCAGTTTTCTCCAAAGTCTTTACAGTGGACTACTATTTTGAGGAAGTGCAGCGCCTTCGTTTTGAGCTTCATGACATCAGCAGCAACCATAATGGACTTAAAGAGGCTGACTTCCTGGGCGCCATGGAGTGCACACTCGGACAGATTGTATCTCAGAGAAAACTGTCTAAAGCTTTATTGAAGCAAGGAAACACAGCTGGCAAATCATCTATCACAGTCACAGCTGAAGAGCTGTCTGGGAATGATGACTATGTGGAGCTCGCCTTCAGTGCCAAGAAACTGGATGACAAGgACTTTTTTAGCAAATCAGATCCATTTCTGGAAATCTTCAGAGTGAATGATGATGGCACAGCATCACTGGTTCATAGAACAGAGacaATTATGAACAATCTCAGCCCTGTCTGGAAATCATTCAAAGTTTCATTAAACACACTCTGCAGTGGAGATCATGATCGGGAGTTAAAGTGTATAGTATGGGACTGGGATTCTAATGGCAAACATGACTTCATAGGAGAATTTCAAACCACTTTTAAGGAGATGAAATCAGCCATGGATGGGAAACAGatcCAGTGGGAGTGTATTAATCCTAAGTACCAAGTGAAAAAGAAGAACTACAGAAATTCTGGAATGGTCATTCTTACCCTGTGCAAGATCATTAAGATGCACTCTTTCCTGGATTACATAATGGGAGGTTGTCAGATTCAGTTCACAGTGGCCATTGATTTCACTGCCTCAAATGGAGACCCTCGAAACAGCTGCTCCCTCCACTACATCCACCCTTACCAGCCCAATGAGTACCTGAAAGCACTGATCGCTGTTGGGGAGATCTGCCAGGACTATGATAGTGACAAAATGTTTCCCGCTTTTGGCTTTGGTGCCCAAATTCCGCCAGACTTCAAAGTTTCTCATGATTTTGCAGTGAATTTTGACGAGGACAATCCAGAATGTGCTGGTGTTCAAGGTGTCATTGAGGCTTATCAGAATTGCCTCCCGAAAATCCAGTTATATGGCCCCACTAATATTGCTCCAATCATCCAGAAAGTTGCAAACTCTGCTTCCGAGGAGATGCACACCAAAGAAGCCATGGAATACTTCATACTGCTGATCCTGACGGATGGAGTGATCACAGATATGGCAGACACACGAGAGGCGATTGTTCATGCGTCACACCTGCCCATGTCCGTCATCATCGTCGGCATAGGAAGCGCAGACTTCAGTGACATGCAGATGCTGGATGGCGATGATGGAATCCTCCGCTCTCCAAAAGGAGAACCGGTCCTGAGGGACATTGTGCAGTTTGTGCCCTTCCGCAACTTCAAACATGCCTCTCCTGCAGCGCTGGCTAAAAGTGTGCTGGCTGAAGTTCCCAATCAAGTGGTGGATTACTACAATGGAAAAGGCATCAAGCCCAAAGGCCTGTCAGACTATGAGTCTTCCAGGGCTTTTAGTCCCTGAGCTACGCAAAGCCATATAGCAACCTCCGTGTCTCAGCTTCAAGATATCTTCATTGATTATTTCAGAGCTTGCTGCATCAGTATAGGTATTAACAAGCAGGTCCATCCAGCAGTTCCACTAGTGTTTGGTTTTTCAGTAGCATTGGCATGTTTCTTCTTACACAGCTGTTAAACTGGGGTCCCACTAGACTTTTCATCCCACCGACTTCACATTTATATGGGAG
>TCONS_00027920
aaacagaacacaaaaacacaaaatgagTAACATCTACGAATCTGCTGCCACCACACTGGGCATCTTTAATAGCCCATGCCTGACAAAAGTGGAGCTCCGTGTCGCCTGTAAAGGAATATCTGACCGGGATGCTCTATCCAAACCTGACCCCTGTGTCGTCCTCAAGATGCAGTCCCATGGACAGTGGTTTGAGGTGGATCGGACAGAAGTGATTCGCAGCAGCATCAGTCCAGTTTTCTCCAAAGTCTTTACAGTGGACTACTATTTTGAGGAAGTGCAGCGCCTTCGTTTTGAGCTTCATGACATCAGCAGCAACCATAATGGACTTAAAGAGGCTGACTTCCTGGGCGCCATGGAGTGCACACTCGGACAGATTGTATCTCAGAGAAAACTGTCTAAAGCTTTATTGAAGCAAGGAAACACAGCTGGCAAATCATCTATCACAGTCACAGCTGAAGAGCTGTCTGGGAATGATGACTATGTGGAGCTCGCCTTCAGTGCCAAGAAACTGGATGACAAGgACTTTTTTAGCAAATCAGATCCATTTCTGGAAATCTTCAGAGTGAATGATGATGGCACAGCATCACTGGTTCATAGAACAGAGacaATTATGAACAATCTCAGCCCTGTCTGGAAATCATTCAAAGTTTCATTAAACACACTCTGCAGTGGAGATCATGATCGGGAGTTAAAGTGTATAGTATGGGACTGGGATTCTAATGGCAAACATGACTTCATAGGAGAATTTCAAACCACTTTTAAGGAGATGAAATCAGCCATGGATGGGAAACAGatcCAGTGGGAGTGTATTAATCCTAAGTACCAAGTGAAAAAGAAGAACTACAGAAATTCTGGAATGGTCATTCTTACCCTGTGCAAGATCATTAAGATGCACTCTTTCCTGGATTACATAATGGGAGGTTGTCAGATTCAGTTCACAGTGGCCATTGATTTCACTGCCTCAAATGGAGACCCTCGAAACAGCTGCTCCCTCCACTACATCCACCCTTACCAGCCCAATGAGTACCTGAAAGCACTGATCGCTGTTGGGGAGATCTGCCAGGACTATGATAGTGACAAAATGTTTCCCGCTTTTGGCTTTGGTGCCCAAATTCCGCCAGACTTCAAAGTTTCTCATGATTTTGCAGTGAATTTTGACGAGGACAATCCAGAATGTGCTGGTGTTCAAGGTGTCATTGAGGCTTATCAGAATTGCCTCCCGAAAATCCAGTTATATGGCCCCACTAATATTGCTCCAATCATCCAGAAAGTTGCAAACTCTGCTTCCGAGGAGATGCACACCAAAGAAGCCATGGAATACTTCATACTGCTGATCCTGACGGATGGAGTGATCACAGATATGGCAGACACACGAGAGGCGATTGTTCATGCGTCACACCTGCCCATGTCCGTCATCATCGTCGGCATAGGAAGCGCAGACTTCAGTGACATGCAGATGCTGGATGGCGATGATGGAATCCTCCGCTCTCCAAAAGGAGAACCGGTCCTGAGGGACATTGTGCAGTTTGTGCCCTTCCGCAACTTCAAACATGCCTCTCCTGCAGCGCTGGCTAAAAGTGTGCTGGCTGAAGTTCCCAATCAAGTGGTGGATTACTACAATGGAAAAGGCATCAAGCCCAAAGGCCTGTCAGACTATGAGTCTTCCAGGGCTTTTAGTCCCTGA

Function

symbol description
cpne4b Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE4 (copine 4).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-926 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE4 (copine 4).

Ensembl:

ensembl_id ENSDARG00000104254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027919 False 2271 mRNA 0.46 16 19028633 19173234
TCONS_00027920 True 1684 mRNA 0.46 15 19032141 19173011

Neighbor

gene id symbol gene type direction distance location
XLOC_013990 cmtm8a coding upstream 40566 18983900 ~ 18988067 (+)
XLOC_013989 NA coding upstream 50354 18959908 ~ 18978279 (+)
XLOC_013988 slc39a7 coding upstream 112696 18903533 ~ 18915937 (+)
XLOC_013987 FP074902.6 coding upstream 145098 18881888 ~ 18883535 (+)
XLOC_013986 NA coding upstream 194024 18833009 ~ 18834609 (+)
XLOC_013992 mrpl3 coding downstream 20617 19193851 ~ 19217263 (+)
XLOC_013993 ptpn23b coding downstream 68138 19241372 ~ 19270755 (+)
XLOC_013994 CR626877.1 coding downstream 91525 19264759 ~ 19264881 (+)
XLOC_013995 ASTE1 coding downstream 225489 19398723 ~ 19408941 (+)
XLOC_013996 wu:fc38h03 coding downstream 239458 19412692 ~ 19432928 (+)
XLOC_013979 BX649471.1 non-coding upstream 646949 18368869 ~ 18381684 (+)
XLOC_013978 NA non-coding upstream 730722 18293368 ~ 18297911 (+)
XLOC_014003 mir196a-2 non-coding downstream 574385 19747619 ~ 19747694 (+)
XLOC_014004 CR382300.1 non-coding downstream 609179 19782413 ~ 19783624 (+)
XLOC_014014 NA non-coding downstream 1135656 20308890 ~ 20309259 (+)
XLOC_014016 NA non-coding downstream 1492103 20665337 ~ 20668756 (+)

Expression


Co-expression Network