RNA id: TCONS_00027920


Basic Information

Item Value
RNA id TCONS_00027920
length 1684
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_013991
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19028633 ~ 19173234 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaacagaacacaaaaacacaaaatgagTAACATCTACGAATCTGCTGCCACCACACTGGGCATCTTTAATAGCCCATGCCTGACAAAAGTGGAGCTCCGTGTCGCCTGTAAAGGAATATCTGACCGGGATGCTCTATCCAAACCTGACCCCTGTGTCGTCCTCAAGATGCAGTCCCATGGACAGTGGTTTGAGGTGGATCGGACAGAAGTGATTCGCAGCAGCATCAGTCCAGTTTTCTCCAAAGTCTTTACAGTGGACTACTATTTTGAGGAAGTGCAGCGCCTTCGTTTTGAGCTTCATGACATCAGCAGCAACCATAATGGACTTAAAGAGGCTGACTTCCTGGGCGCCATGGAGTGCACACTCGGACAGATTGTATCTCAGAGAAAACTGTCTAAAGCTTTATTGAAGCAAGGAAACACAGCTGGCAAATCATCTATCACAGTCACAGCTGAAGAGCTGTCTGGGAATGATGACTATGTGGAGCTCGCCTTCAGTGCCAAGAAACTGGATGACAAGgACTTTTTTAGCAAATCAGATCCATTTCTGGAAATCTTCAGAGTGAATGATGATGGCACAGCATCACTGGTTCATAGAACAGAGacaATTATGAACAATCTCAGCCCTGTCTGGAAATCATTCAAAGTTTCATTAAACACACTCTGCAGTGGAGATCATGATCGGGAGTTAAAGTGTATAGTATGGGACTGGGATTCTAATGGCAAACATGACTTCATAGGAGAATTTCAAACCACTTTTAAGGAGATGAAATCAGCCATGGATGGGAAACAGatcCAGTGGGAGTGTATTAATCCTAAGTACCAAGTGAAAAAGAAGAACTACAGAAATTCTGGAATGGTCATTCTTACCCTGTGCAAGATCATTAAGATGCACTCTTTCCTGGATTACATAATGGGAGGTTGTCAGATTCAGTTCACAGTGGCCATTGATTTCACTGCCTCAAATGGAGACCCTCGAAACAGCTGCTCCCTCCACTACATCCACCCTTACCAGCCCAATGAGTACCTGAAAGCACTGATCGCTGTTGGGGAGATCTGCCAGGACTATGATAGTGACAAAATGTTTCCCGCTTTTGGCTTTGGTGCCCAAATTCCGCCAGACTTCAAAGTTTCTCATGATTTTGCAGTGAATTTTGACGAGGACAATCCAGAATGTGCTGGTGTTCAAGGTGTCATTGAGGCTTATCAGAATTGCCTCCCGAAAATCCAGTTATATGGCCCCACTAATATTGCTCCAATCATCCAGAAAGTTGCAAACTCTGCTTCCGAGGAGATGCACACCAAAGAAGCCATGGAATACTTCATACTGCTGATCCTGACGGATGGAGTGATCACAGATATGGCAGACACACGAGAGGCGATTGTTCATGCGTCACACCTGCCCATGTCCGTCATCATCGTCGGCATAGGAAGCGCAGACTTCAGTGACATGCAGATGCTGGATGGCGATGATGGAATCCTCCGCTCTCCAAAAGGAGAACCGGTCCTGAGGGACATTGTGCAGTTTGTGCCCTTCCGCAACTTCAAACATGCCTCTCCTGCAGCGCTGGCTAAAAGTGTGCTGGCTGAAGTTCCCAATCAAGTGGTGGATTACTACAATGGAAAAGGCATCAAGCCCAAAGGCCTGTCAGACTATGAGTCTTCCAGGGCTTTTAGTCCCTGA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-926 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE4 (copine 4).

Ensembl:

ensembl_id ENSDART00000192432

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029887 lncRNA upstream 53862 18964090 ~ 18978279 (+) False XLOC_013989
TCONS_00029711 lncRNA upstream 53862 18970130 ~ 18978279 (+) False XLOC_013989
TCONS_00029888 lncRNA upstream 53862 18970356 ~ 18978279 (+) False XLOC_013989
TCONS_00029889 lncRNA upstream 53862 18971183 ~ 18978279 (+) True XLOC_013989
TCONS_00029709 lncRNA upstream 65185 18963819 ~ 18966956 (+) False XLOC_013989
TCONS_00027961 lncRNA downstream 839742 20012753 ~ 20014127 (+) False XLOC_014008
TCONS_00027962 lncRNA downstream 858909 20031920 ~ 20032628 (+) True XLOC_014008
TCONS_00027969 lncRNA downstream 1004935 20177946 ~ 20179239 (+) False XLOC_014011
TCONS_00027979 lncRNA downstream 1101526 20274537 ~ 20277416 (+) False XLOC_014013
TCONS_00029890 lncRNA downstream 1135879 20308890 ~ 20309259 (+) True XLOC_014014
TCONS_00027918 mRNA upstream 44074 18983900 ~ 18988067 (+) True XLOC_013990
TCONS_00027917 mRNA upstream 116204 18903542 ~ 18915937 (+) True XLOC_013988
TCONS_00027916 mRNA upstream 119589 18903533 ~ 18912552 (+) False XLOC_013988
TCONS_00027914 mRNA upstream 205395 18812805 ~ 18826746 (+) False XLOC_013985
TCONS_00027913 mRNA upstream 223853 18799319 ~ 18808288 (+) True XLOC_013984
TCONS_00027921 mRNA downstream 20840 19193851 ~ 19217263 (+) True XLOC_013992
TCONS_00027922 mRNA downstream 68361 19241372 ~ 19270746 (+) False XLOC_013993
TCONS_00027923 mRNA downstream 68361 19241372 ~ 19270755 (+) True XLOC_013993
TCONS_00027925 mRNA downstream 225712 19398723 ~ 19408941 (+) True XLOC_013995
TCONS_00027926 mRNA downstream 239681 19412692 ~ 19432928 (+) True XLOC_013996
TCONS_00027899 other upstream 1628246 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 1658455 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 2948040 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 2963038 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 2970180 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 91748 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 574608 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 581939 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 583166 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 609402 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile

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