RNA id: TCONS_00027961


Basic Information

Item Value
RNA id TCONS_00027961
length 663
lncRNA type retained_intron
GC content 0.40
exon number 5
gene id XLOC_014008
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19988869 ~ 20033047 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctccccctcgctggagctcagctctgctcaaatggctctgcagcgagcgcCCTCTCTAACGTTTGGATATTTGGGATCTGTATGTctttttataaaatgaaattaatacttttatttcagttagactcatttaagaaatgttttttttaaacaataagctGCTAAACTGTTTTGACAATTCAAATTGTAATAAGAAGAAATGATTCTTGATCATTAAGTCAACATTATGGAATATTTTCTGAAAGGACAACCAAGACCAAAGAaTGTCCCCAGCGTTCTTTTATCTCCATGCAGCCTTCAGCCTTATTGAAGAACAACTGGCGCCAAAACTCACAAGATATGGAGAAATGCTACAAAGATCTGTCAGAGTGTGAATCTTCATTGCTGGAATTAAATCTGCTGCTGAAAAATATGGAGGTTCTTCATCGAACATTCTCAGCACCTGCCATTAACTTACTGCAGAGCGAAGGTTCCAAAAAAGAGAAACGAGGACACAAAAAATGGAAATCAAAGAATTATAGCAAGGAAAATAAAAATGCTCTACAGAATCCTGATGCTCCATCTTCTCGTCTACATGTGTCCCATCCTAACTTGGTATATTCAGAACCCGTTTCACCAGACTCATGCCTGGAGAGTCCAGACTCACCCACGGAAGCCTCTCG

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0097038 perinuclear endoplasmic reticulum cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-77 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; perinuclear endoplasmic reticulum; and plasma membrane. Orthologous to human OSBPL3 (oxysterol binding protein like 3).

Ensembl:

ensembl_id ENSDART00000150925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029887 lncRNA upstream 1034474 18964090 ~ 18978279 (+) False XLOC_013989
TCONS_00029711 lncRNA upstream 1034474 18970130 ~ 18978279 (+) False XLOC_013989
TCONS_00029888 lncRNA upstream 1034474 18970356 ~ 18978279 (+) False XLOC_013989
TCONS_00029889 lncRNA upstream 1034474 18971183 ~ 18978279 (+) True XLOC_013989
TCONS_00029710 lncRNA upstream 1045797 18963819 ~ 18966956 (+) False XLOC_013989
TCONS_00027962 lncRNA downstream 17793 20031920 ~ 20032628 (+) True XLOC_014008
TCONS_00027969 lncRNA downstream 163819 20177946 ~ 20179239 (+) False XLOC_014011
TCONS_00027979 lncRNA downstream 260410 20274537 ~ 20277416 (+) False XLOC_014013
TCONS_00029890 lncRNA downstream 294763 20308890 ~ 20309259 (+) True XLOC_014014
TCONS_00029712 lncRNA downstream 580174 20594301 ~ 20594681 (+) True XLOC_014015
TCONS_00027958 mRNA upstream 3978 19988869 ~ 20008775 (+) False XLOC_014008
TCONS_00027957 mRNA upstream 28180 19984181 ~ 19984573 (+) True XLOC_014007
TCONS_00027956 mRNA upstream 32621 19976990 ~ 19980132 (+) True XLOC_014006
TCONS_00027954 mRNA upstream 225001 19786117 ~ 19787752 (+) False XLOC_014005
TCONS_00027955 mRNA upstream 225356 19786213 ~ 19787397 (+) True XLOC_014005
TCONS_00027963 mRNA downstream 23730 20037857 ~ 20054565 (+) True XLOC_014009
TCONS_00027964 mRNA downstream 149699 20163826 ~ 20177002 (+) False XLOC_014010
TCONS_00027965 mRNA downstream 149730 20163857 ~ 20176457 (+) True XLOC_014010
TCONS_00027966 mRNA downstream 163081 20177208 ~ 20191378 (+) False XLOC_014011
TCONS_00027967 mRNA downstream 163760 20177887 ~ 20190810 (+) False XLOC_014011
TCONS_00027960 other upstream 1955 19989405 ~ 20010798 (+) False XLOC_014008
TCONS_00027953 other upstream 229129 19782413 ~ 19783624 (+) True XLOC_014004
TCONS_00027941 other upstream 244080 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other upstream 251849 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027938 other upstream 265059 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027968 other downstream 163796 20177923 ~ 20183284 (+) False XLOC_014011
TCONS_00027970 other downstream 163863 20177990 ~ 20187213 (+) False XLOC_014011
TCONS_00027974 other downstream 187362 20201489 ~ 20226290 (+) False XLOC_014012
TCONS_00028001 other downstream 1903196 21917323 ~ 21917453 (+) True XLOC_014029
TCONS_00028012 other downstream 2754984 22769111 ~ 22769227 (+) True XLOC_014038

Expression Profile

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