Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027968 |
| length | 743 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_014011 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 20177208 ~ 20191378 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048026 | positive regulation of mRNA splicing, via spliceosome | biological_process |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1391 | Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Orthologous to human TRA2A (transformer 2 alpha homolog). |
| ensembl_id | ENSDART00000145225 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027962 | lncRNA | upstream | 145295 | 20031920 ~ 20032628 (+) | True | XLOC_014008 |
| TCONS_00027961 | lncRNA | upstream | 163796 | 20012753 ~ 20014127 (+) | False | XLOC_014008 |
| TCONS_00029887 | lncRNA | upstream | 1199644 | 18964090 ~ 18978279 (+) | False | XLOC_013989 |
| TCONS_00029711 | lncRNA | upstream | 1199644 | 18970130 ~ 18978279 (+) | False | XLOC_013989 |
| TCONS_00029888 | lncRNA | upstream | 1199644 | 18970356 ~ 18978279 (+) | False | XLOC_013989 |
| TCONS_00027979 | lncRNA | downstream | 91253 | 20274537 ~ 20277416 (+) | False | XLOC_014013 |
| TCONS_00029890 | lncRNA | downstream | 125606 | 20308890 ~ 20309259 (+) | True | XLOC_014014 |
| TCONS_00029712 | lncRNA | downstream | 411017 | 20594301 ~ 20594681 (+) | True | XLOC_014015 |
| TCONS_00029891 | lncRNA | downstream | 482053 | 20665337 ~ 20668756 (+) | True | XLOC_014016 |
| TCONS_00029893 | lncRNA | downstream | 504325 | 20687609 ~ 20701153 (+) | False | XLOC_014017 |
| TCONS_00027964 | mRNA | upstream | 921 | 20163826 ~ 20177002 (+) | False | XLOC_014010 |
| TCONS_00027965 | mRNA | upstream | 1466 | 20163857 ~ 20176457 (+) | True | XLOC_014010 |
| TCONS_00027963 | mRNA | upstream | 123358 | 20037857 ~ 20054565 (+) | True | XLOC_014009 |
| TCONS_00027959 | mRNA | upstream | 144876 | 19989380 ~ 20033047 (+) | False | XLOC_014008 |
| TCONS_00027958 | mRNA | upstream | 169148 | 19988869 ~ 20008775 (+) | False | XLOC_014008 |
| TCONS_00027973 | mRNA | downstream | 17970 | 20201254 ~ 20245496 (+) | False | XLOC_014012 |
| TCONS_00027975 | mRNA | downstream | 18309 | 20201593 ~ 20247336 (+) | True | XLOC_014012 |
| TCONS_00027976 | mRNA | downstream | 90980 | 20274264 ~ 20292397 (+) | False | XLOC_014013 |
| TCONS_00027977 | mRNA | downstream | 91207 | 20274491 ~ 20292308 (+) | False | XLOC_014013 |
| TCONS_00027978 | mRNA | downstream | 91228 | 20274512 ~ 20292534 (+) | False | XLOC_014013 |
| TCONS_00027960 | other | upstream | 167125 | 19989405 ~ 20010798 (+) | False | XLOC_014008 |
| TCONS_00027953 | other | upstream | 394299 | 19782413 ~ 19783624 (+) | True | XLOC_014004 |
| TCONS_00027941 | other | upstream | 409250 | 19754950 ~ 19768673 (+) | False | XLOC_014002 |
| TCONS_00027942 | other | upstream | 417019 | 19756177 ~ 19760904 (+) | False | XLOC_014002 |
| TCONS_00027938 | other | upstream | 430229 | 19747619 ~ 19747694 (+) | True | XLOC_014003 |
| TCONS_00027974 | other | downstream | 18205 | 20201489 ~ 20226290 (+) | False | XLOC_014012 |
| TCONS_00028001 | other | downstream | 1734039 | 21917323 ~ 21917453 (+) | True | XLOC_014029 |
| TCONS_00028012 | other | downstream | 2585827 | 22769111 ~ 22769227 (+) | True | XLOC_014038 |
| TCONS_00028017 | other | downstream | 2810899 | 22994183 ~ 22995032 (+) | True | XLOC_014040 |
| TCONS_00028019 | other | downstream | 2860401 | 23043685 ~ 23045243 (+) | True | XLOC_014042 |
