CI01180000_00368639_00375465 (ZC3H6)


Basic Information

Item Value
gene id CI01180000_00368639_00375465
gene name ZC3H6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 368639 ~ 376247 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_00368639_00375465.mRNA
GGGAGGATGGTGAATTGGAGGATGGCGAAATAGATGATGAAGGCATAAGCATAGAAGAAGTGAAGGAAATTAAGGAAGAGTCTGAAGAGGCCGAGAAAGACAAAGAGAAGGTAAAGGAGAGAGAAAAAGATGACAAGTCGCACCGGCATTCCCGAAAGCGACACAGGAAAATTAAAGAGAAGCGACGGTCGAAGAGAAGGAGACGAGACCGACAAAAGCATCACTCTCCATCCAGTGGCTCCAGCTCGGACAGCTATGACTCAGATCACGAGCGTCAAGACAGACCTAAGAGCAAAAAGAGCAAAGGAACATATCGAGACCATGCCGGGGAGTTGGCACAGCGGGAAAATGAACCCGTAAAGCCACCGAGATCAATGCAGCACAAGAACAGCGATTTGGACAAATACAGTGACTACAGTGAAGAAAAGTATGACTATGATGACGAGGACGATTTCTCAGAGGAGTTGTCTAAATACAAACATGCTAAAGAGTCATCTGGGCATGGCAGAGGAGGGCCACCTAAAGACCAGGCCAAGAGACCAATTATGAAGGGACAACAAAAACAACAACAGCAGCAGGTTGGTGGGCAGCGCGGTAGAGGTCGTGGTGCCATTGGCAGGGGACGAGGAATGCCCAACAAAAATAAGAAACAAAAGGGCAAGAACTGGGGCAGAGGCCGTGGTCGAGGAGGAGAGCAGGGTGGAGGAGACGGGCAGGAATCTAAAGGTCCGCCCAATTTCCAGAAGAAGCGTCCAATCATGAGCCAGGAATTCATTAATCAACATACGGTTGAACACAATGGGAGGCACATTTGTAAATATTTCCTTGAGGGTCGATGCATCAAGATCCTAAATACAGATGAGGAAACTGTCAATGAAGATGAGATGGAGTTAGAAGATCTGAGAAAACAAGGAATTGCCCCACTGCCTAAACCTCCTCCCGGAGTTGGATTGTTACCCACCCCTGGTCCTGGAAGTCCCCCGGATGGAGGCAAGAAGATCCCCTCTCTGTTTGAGATCAAAGTTCAGCCTACTGTGGACTTGGCACAGAAGATTGCTCTAAGGCCCAATTTCTACAACAGTACATCTCCCCCTGCTGGACAGTTTCAAGGTGGTCCACAGTTTGGCAGTAGCCCTGAGGATATGCAGGCTGGCAATATGATGTCTTCACCACCCAATCCTTCCCATCCCCCTCATCCAGGCTCCATAAGGAGCCCTCCCCTACCATTCACAGGTCCAGGAATGCCCCATAGCCCTCCAGGCCAACCTCCACCCCAAGGCTTTGGTCAGTGCTCTCCAATGCCTCCTCCAGGTCAGCCTCCTGCTTTCCACGGCAACATGCAGCACATGAACCATCCTCCAGTGAATCAGCAGGGGGCTCCATTTCAACCTGTGCCTGACATGCAAATGAAAATGCCTTTCCAAAGCATGGGCCAGATGCCCTCCGAGTTCTTCAAGAATTTGTTTAGCAGCCAGTCTCTGGCCCAAGGGGATGATGGACCCATCCAGGACTCCCAGCCACATGGTAACGCTGATTCCAGTGGGATGCAGGACTTCCTGCCAGCTGTACAGAAAGTTTTACTTTTACATCTAAACCAGAACAAGCAAGACTCTGACTCTCATAGGGATGAGGGACAAGGATCTGCACCTCCCAACAGAGAGAAAGATGAAACCCCTAATTGGTACTCCAGTGACGAGGAAGAGGGCAGTAGTGTAACAGCCATCCTTAATTCTCTAAAGAAGCAGAATGAAATGTTGAAAAACCAGCCTATCATGGCACCAGCCGACCCTAGACTCCAGAAGGAGCGATCTTTGCCCGGCGATCCTCGAGTAAAAGCTGACCCACGTCAGCGACCCCCAGACCCCAGGAAAGACGCTGGAGATGGTGTCGGGGATCCCAGGATGGCCAGAGACCCACGCAAGATGAAACCTATGGATGCATCCAAACCTGATCCTCATCGCCACCCAAACCCCTCCACGTCCCACAAACCGCCCGCTGGAGAGGATGATGAGGAGTTTGAGAGAGAGCTAAGGGAAAGAGCAGCCTTGATCCCATTGGATCCCAGTCCTGGAGCCACGCTTCGAGACCCCCGCTGTCAGATCAAGCAGTTCAGTCACATCCGGGTGGATATTCTCCTCCAGCGTCCGGCCTTTGCTCAAACCGTGGTTTGGGCTCCAGAGGACCTCATTCCTCTGTTGGTTCCCAAACAGGAGCACTCCATAAACCTGCCGCTCCCACCTTTAATAGCAGATGCTCAACTAAACCGTAGCCTTTCCTCCCCACCGGATCACCCTCCATCAGCAACTCTGTCTCCTCCTGATCCACGTCTCGCAGCCGCCCGCTTCAAGGAGGGTGTTGGTCGACTCGGCAGCCCTCCCGGTAGGACGGTAGATTCTCGCCACCACCTTCCGGACAAGCCCTTGGACCCACGTACTCACAAGACTCTTGATCCCAGAATCAGCCGATCTGGCAGCCTGGACTCCAAGCTACCAGGTGTGAGGGAGAGTCCGTCTGGAGGAGGAGATCCACGGCTACAGCGTGGATCCTCAAACCAACCTGTTGCCGCTTCCGCTAAGCCCGATTCGGAGAAGTTGCCCCCATATGCTCCCCGTCTGGCATCTTCCATAGGTGCGGGTCTTGAGAGCCCAACCACACTGTTAGGCGGGATCAGTTTATACGATCCGCGCAATCACAGCTTACTCTCCCCGAAACGTGAAAGCGAGGAGCACCCTAAAAAGTCGAGTATCCTAAAGCCTCCTGCGAAGCTCCAAAGCTCCCCACCACAGGGAACAGAGATGGAAAAAGATGAAAAAAGTCCAGTTGATGACTCTGAGAGCAACACAAGTGGCTGTACGCCAAACCCTCCTCCTGTGCCTACCGTAATGCCAGCGTCTCCGTGCTCGCCAGTCCGGGCGGCAGCTCCCGCTGTGCACAACTTGCCCATCCAGGCACTAGCAGGACTGATACGGCCTGCTTACACTGACCCGCGGCAGAACAGACCCGTGGGCTCTGCCGGTGGGACGCCGCAAGAGGATGAGGAGGACAAAGACAGTAAGAAGAAAGACAGGCCCCTGAGGGATGTCTTTAAAACCTTTGACCCTACAGCCTCTCCGTTCTGTCAGTAAACACACTTACACTGAATATAGCTCATGTATACTGTATCTGTACATCTGTTCTTTGTATTCACCCTGCATGTATATGAAGCTTTTCTATTTATTTATATTTGTTTGTACATATATTCTCCACTGCTGCATCATGGTCTAAGCAGAGATATTTTTCTTTTGGCCCTTGTGCATTCATTAGACTGTCACGACAAAGACTTTATTTGCTCAAGAAGCATTTTAAGTAAAAATTATATCTGGTATATGGACACTTTGGTAATCAGAGTGTAATATCAGTGATACAATGGTTCTGTCGCTAGAGAAGGTTAAAAGGGATGTGTGGCTTATAGTATTCATATTTGTAGTACTGTGTAATACATAAATCTATTAAAAATATACATTTTTGCTAAATTCCCACAGTATTTATCACATTACTACATACAAAGCATATATAAACATTGTAATATAGCAGGACTTCTATGTCTCATTTATCTCAAATGTGCTTTTCCATCAAAGTTGGCAGTTGTGATTTTGGTGAGGAAAATGGTTAATGTATGAGATTACTTTCAGAGAATCTCTATTGTAAATGGTTTCCTTTTTAACACGAGGCATTTTTCATCTTTTTTATTGTCATTGGTTGTTTTTTTTTGTGTGTGTAGATAATTTTATTGTATTTGTTTATGTATGTTTTTCCACAGAAAATTCTGAATCGCTTTTGTGTTCTTTTACCATTGACTGAAATGTTAGTAAGGGAATTTAAACACAACAGTCACTTTCCTCTTTTTTTTTAAAATTCATTGTGTAA

Function

symbol description
zc3h6 Predicted to enable metal ion binding activity. Is expressed in brain; digestive system; eye; head; and liver.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_00368639_00375465.mRNA True 3906 mRNA 0.48 9 368639 376247

Neighbor

gene id symbol gene type direction distance location
CI01180000_00361420_00364335 NA coding upstream 3513 361420 ~ 365126 (+)
CI01180000_00306160_00314770 NA coding upstream 52895 306160 ~ 315744 (+)
CI01180000_00263000_00297934 MERTK coding upstream 70173 263000 ~ 298466 (+)
CI01180000_00250154_00256723 LHCGR coding upstream 109971 250154 ~ 258668 (+)
CI01180000_00105493_00124081 NA coding upstream 244556 105382 ~ 124083 (+)
CI01180000_00427700_00437883 NA coding downstream 51403 427650 ~ 438466 (+)
CI01180000_00661446_00671602 MSH6 coding downstream 284862 661109 ~ 672188 (+)
CI01180000_00737754_00743866 NA coding downstream 359063 735310 ~ 744211 (+)
CI01180000_00765917_00776252 NA coding downstream 389550 765797 ~ 776911 (+)
CI01180000_00812535_00858607 NA coding downstream 435610 811857 ~ 859005 (+)
G678508 NA non-coding upstream 41661 322749 ~ 326978 (+)
G678448 NA non-coding upstream 67311 299171 ~ 301328 (+)
G678501 NA non-coding upstream 117726 250685 ~ 250913 (+)
G678499 NA non-coding upstream 124928 243506 ~ 243711 (+)
G678493 NA non-coding upstream 133437 233616 ~ 235202 (+)
G678444 NA non-coding downstream 11594 387841 ~ 390386 (+)
G678554 NA non-coding downstream 58486 434733 ~ 487143 (+)
G678442 NA non-coding downstream 69492 445739 ~ 492631 (+)
G678595 NA non-coding downstream 127624 503871 ~ 551174 (+)
G678608 NA non-coding downstream 156903 533150 ~ 533648 (+)
G678440 NA other upstream 216987 147934 ~ 151652 (+)
G678751 NA other downstream 683596 1059843 ~ 1066091 (+)
G678637 NA other downstream 773304 1149551 ~ 1155672 (+)
G678946 NA other downstream 1142106 1518353 ~ 1612547 (+)
G679076 NA other downstream 1418923 1795170 ~ 1799433 (+)
G679324 NA other downstream 2012620 2388867 ~ 2397360 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006256 zc3h6 coding NC_007124.7 CM002897.2 47821524 ~ 47839365 (+)