CI01180000_01424083_01427043 (TOMM20B, TOMM20, TOMM20A)


Basic Information

Item Value
gene id CI01180000_01424083_01427043
gene name TOMM20B, TOMM20, TOMM20A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1423527 ~ 1427387 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_01424083_01427043.mRNA
CTGTGGTGAATGTTTTTTTTTTAATTCGGATATTAACATTATACATGCACTTTCGTTCAAATGCAAATATTAAACAAACTGAAAAAGCACTGTCTATGCTTTTTTTTATTAGTATACTTGCATTTATGAATTTGAAATCAGGTGAAGTAAATTAATAAAATAAACGTTTATTTATCCTCTTTATAATATTCAACGAAGCCACAAAGTGCATATTAATCTTTCAGGCGTTTGCAGCGAACACCTCCACAGTGATTCCGTCACTCAGAGGGGTCCTTCCGCCGCTCTCTGTGAGCACGTGCACCAGGAGCAGTAGCTGCAGAAGCTCTCCGTTAACGGCGCCGCGATGATAGGCGGCAAACCGAGCGCGATCGCCGCAGGCGTCTGTGGCGCGCTCTTCATCGGGTACTGTATCTATTTCGACAGAAAACGACGCAGCGATCCGAACTTCAAAACCAAACTGCGTGAACGGAGGAAGAAGCAAAGAACCGCTCAAGATAAATCTGGACTCGCTCAAGTGCCAGATCTTAAAGATGCCGCAGCCGTGCAGAAGTTTTTCCTGGATGAGATTCAGCTGGGCGAGGAGCTGCTGGCTCAGGGAGACTACGAGAAGGGTGTGGATCACCTGACCAATGCCATCGCTGTGTGCGGCCAACCACAGCAGCTCCTGCAGGTGCTACAGCAGACGTTACCGCAGCCTGTCTTCCAGATGCTGCTCACCAAACTACCATCGATCAGCCAGGTGAGCGCGACACGTCTCTGCACTCAGGTGTGCCGTCCTGTGCATTCTTTAAAAACCCCCCACAAGCTGCCTGTCGCTTTTTGGGACAAGAAAGAATGCGAGAGAAAAACCAAGAACTATCCAAAGCTAAATGTCTGTGCAGTGACTCTTAGCTATTTCACCTCTTGAACATTCAAATATCTGTCATTGACATTTATGCGACACATGCTGTGAGTAGAGCTGACCTTGTGTTAACCTTTTCACAGCGGATAGTAAGTTCTCAGAGTCTGGAGGAAGATGATGTCGAGTGAAACGTGACATTCCTTTCTGTGTGACGAACCAGCAACGGACCTTCTGATCTTCATCTCTCTCGTCTTTTGTTTTTCCTGTTGCACATCTGTCCTGACCACTGCACTCACTGTGTGTTCCTGGTGTTTGCATTGACATTGTTCATATAAAATGGATGTATTTTTATTCTAAACATGATCTACCGTAATCACGTATTTGAATGCAAATGAAAACGTCAGGTTAAGAATATACTATTTTAATTACAAGCTAAGTTCATAAGCACTCAGTTCCTTTAACGTGTCATTTAGATATTTCTTATGTTTAGTGGTTGATCATATATTAAGGATGAATCTATTTGCAATGTTAATCAGATGTTTTTGTTTATGAATGTTGTGTTTTTTGGCATATTTGTATGCACTGAACTTTAAATAATAGATTCTTCTTTGTATTCATTAAAT

Function

symbol description
tomm20b Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).
tomm20a Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within protein targeting and regulation of transcription, DNA-templated. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate.
tomm20 Enables protein-transporting ATPase activity and unfolded protein binding activity. Involved in protein targeting to mitochondrion. Located in mitochondria-associated endoplasmic reticulum membrane and mitochondrial outer membrane.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17770 TOM20; mitochondrial import receptor subunit TOM20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_01424083_01427043.mRNA True 1464 mRNA 0.43 4 1423527 1427387

Neighbor

gene id symbol gene type direction distance location
CI01180000_01369334_01369786 NA coding downstream 53495 1369004 ~ 1370032 (-)
CI01180000_01366302_01368307 IRF2BP2, IRF2BP2A, I2B2A coding downstream 54721 1366263 ~ 1368806 (-)
CI01180000_01250357_01273327 NA coding downstream 149742 1250291 ~ 1273785 (-)
CI01180000_01180852_01194369 TSNAX coding downstream 229158 1180596 ~ 1194369 (-)
CI01180000_01122408_01163931 NA coding downstream 259596 1122201 ~ 1163931 (-)
CI01180000_01434206_01489145 ARID4B coding upstream 5996 1433383 ~ 1489145 (-)
CI01180000_01500501_01503809 NA coding upstream 72258 1499645 ~ 1504246 (-)
CI01180000_01554271_01567480 NA coding upstream 126518 1553905 ~ 1567480 (-)
CI01180000_01592917_01610651 LYST coding upstream 164522 1591909 ~ 1610651 (-)
CI01180000_01612108_01616924 LYST coding upstream 184721 1612108 ~ 1616924 (-)
G679822 NA non-coding downstream 136432 1259390 ~ 1287095 (-)
G679788 NA non-coding downstream 278125 1091004 ~ 1145402 (-)
G679707 NA non-coding downstream 325360 1041771 ~ 1098167 (-)
G679676 NA non-coding downstream 545917 877380 ~ 877610 (-)
G679670 NA non-coding downstream 552504 870791 ~ 871023 (-)
G679691 NA non-coding upstream 2307 1429694 ~ 1430965 (-)
G679701 NA non-coding upstream 4098 1431485 ~ 1431740 (-)
G679687 NA non-coding upstream 4580 1431967 ~ 1432920 (-)
G679700 NA non-coding upstream 54401 1481788 ~ 1484144 (-)
G679688 NA non-coding upstream 146851 1574238 ~ 1589735 (-)
G679801 NA other downstream 252999 1169859 ~ 1170528 (-)
CI01180000_01776944_01781186 NA other upstream 351205 1776872 ~ 1781339 (-)
G680525 NA other upstream 1188967 2616354 ~ 2616756 (-)
G680506 NA other upstream 1343660 2771047 ~ 2851916 (-)
CI01180000_02988807_02995955 NA other upstream 1559694 2987081 ~ 2997401 (-)
CI01180000_03016426_03018342 NA other upstream 1587046 3014433 ~ 3018343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006963 tomm20a coding NC_007124.7 CM002897.2 49541003 ~ 49586255 (-)