G679687


Basic Information

Item Value
gene id G679687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1431967 ~ 1432920 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU800446
TGAGAATCACCATTAAGAATAAAGAGAATTGTATATTTAATAAATAATTATATATAAATCAATTTCACAATGTGAAAAAAATCTTATGAAACAGTTCACAAAAAAATCTTGCATCATGAAACCTATTTTTAGCAGGTATTTTATTAAATATATAATTAAAACACCATTGAGAATGAGAAATGTGTATTTAATAAATAATTATATATAAATCAATTGAAAAACAAAGTTTTGGGGTGAAATGCGACTTGTTTTGAGTTTTACCCCACAGTGTCGGTGCGGATGACGCCTTATGAATGTTAAACCCCCGATTTGTCCAGTGTTTTTTTTTATTTTTATGATCTCAGAAAGCCTTATGAAAGGTATATCAGCCCTTCATCTTCACCGTTACCCACTCGATCCATTCAGTGTGTTCGTCTCGTCACAGAAAGCCGAAGGAGGCACGAGCCGGTCGGGCCAAGGGCTATCGAGCCGCGCGCTCACGATGGAGAATTTGCGTTCAGTATCTCTGGAGGTGAAATGTATTATGATTGTTGACAATTTGAGAATTGATGACTTTTTCTGGCAGCCAGGATTCTAAATGTATTTTACTACTGAAATCTATCCAGACCCTGTGGGTGGGGTTTTAATGGTTAATGTGGCAGTATTCAGAAGTGCAATGGCAGATTCATCTGGAATCGTGTGCAATGACAGATGCCCATCTGTTCTGTACGTAGCCTTTGTGTGTTTGTGTCTTCCTTTTTTTCCATTTCCCACCTCCTTTTGCAATGCCATACATGTAGGATGTCGAGTTATAAAGCACTGTGGGAAAACAGTCCACTGGTTTGGTTGCTTATACTAAGTAGTGAAAGGTGAATTAATTTGGTTGAGTTTAAAGGATTAGTTCACTTCAGAATTAAAACTTCCTGATAATTTACTCACCCCCATGTCATCCGAGATGTTCATGTCTTTCTTTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU800446 True 954 lncRNA 0.37 1 1431967 1432920

Neighbor

gene id symbol gene type direction distance location
CI01180000_01424083_01427043 TOMM20B, TOMM20, TOMM20A coding downstream 4580 1423527 ~ 1427387 (-)
CI01180000_01369334_01369786 NA coding downstream 61935 1369004 ~ 1370032 (-)
CI01180000_01366302_01368307 IRF2BP2, IRF2BP2A, I2B2A coding downstream 63161 1366263 ~ 1368806 (-)
CI01180000_01250357_01273327 NA coding downstream 158182 1250291 ~ 1273785 (-)
CI01180000_01180852_01194369 TSNAX coding downstream 237598 1180596 ~ 1194369 (-)
CI01180000_01434206_01489145 ARID4B coding upstream 463 1433383 ~ 1489145 (-)
CI01180000_01500501_01503809 NA coding upstream 66725 1499645 ~ 1504246 (-)
CI01180000_01554271_01567480 NA coding upstream 120985 1553905 ~ 1567480 (-)
CI01180000_01592917_01610651 LYST coding upstream 158989 1591909 ~ 1610651 (-)
CI01180000_01612108_01616924 LYST coding upstream 179188 1612108 ~ 1616924 (-)
G679701 NA non-coding downstream 227 1431485 ~ 1431740 (-)
G679691 NA non-coding downstream 1002 1429694 ~ 1430965 (-)
G679822 NA non-coding downstream 144872 1259390 ~ 1287095 (-)
G679788 NA non-coding downstream 286565 1091004 ~ 1145402 (-)
G679707 NA non-coding downstream 333800 1041771 ~ 1098167 (-)
G679700 NA non-coding upstream 48868 1481788 ~ 1484144 (-)
G679688 NA non-coding upstream 141318 1574238 ~ 1589735 (-)
G679897 NA non-coding upstream 165834 1598754 ~ 1599172 (-)
G679923 NA non-coding upstream 302222 1735142 ~ 1735743 (-)
G679905 NA non-coding upstream 399235 1832155 ~ 1834468 (-)
G679801 NA other downstream 261439 1169859 ~ 1170528 (-)
CI01180000_01776944_01781186 NA other upstream 345672 1776872 ~ 1781339 (-)
G680525 NA other upstream 1183434 2616354 ~ 2616756 (-)
G680506 NA other upstream 1338127 2771047 ~ 2851916 (-)
CI01180000_02988807_02995955 NA other upstream 1554161 2987081 ~ 2997401 (-)
CI01180000_03016426_03018342 NA other upstream 1581513 3014433 ~ 3018343 (-)

Expression


Co-expression Network