G679688


Basic Information

Item Value
gene id G679688
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1574238 ~ 1589735 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU800447
CTGCAGAATGAGCCCTAGTGATCCTCCAGCGATACTAAACATCATCTGATAATACACAACGGTCCACCGATACCGGAGTGAACGCCGATTTCTTAAAGGCGCAGTGACACCTGCATCCTCCTCGCGCGCGTTTGTGCGTCACATCGAGGTTCCCCTCACATCTCATGAACCGACACCGAATCAACCACCAGAGCAGAAACCGGGGAAATACTCGACGTTTAACGGCGTTTGGCGGATGCACGCGAGCGGACGGTGACCGTGTGAGGTGTTGCGGGTTTTTCCTCGTCGCGTTCGGGTGGAGTCGAGCCACATACTGAAGTCTGACCACTGACACACTTCAGGACTCAATCATGAAGGACGGAATGGCCAATAACAGCACCGCCAGCATCTCTCAGGCCCGGAAAGCCGTGGAGCAGCTGAAGATGGAGGCCTGCATGGACAGGATAAAGGTGTCCAAGGCGGCGGCGGACCTGATGGCGTACTGTGACGCACACATACGAGAGGACCCGCTCATCGTGCCCGTCCCGGCCTCGGAAAACCCCTTCAGGGAGAAGAAGTTCTTCTGCACCATCCTCTGAGGCCGGGCCGGGCTGCAGGTTCTGCCGTGAGGTTTCCACGTCTCTGGCTGCTGCCGTTGAGCTGTGTTTGAGTGGCAGCCGCCGCGTCTGTTGATGGTCCGACCCCTCCCGGAGGCCTGTGGGGGTTTTTGGGGGGGAGTCAATTAACTTGGCAACCCAGTCAGAGCATCTCATGTCTCGTTAACTAGGTTTGTTATTGCTTCGTAATTAGAGAACAGCCTTTCTCACTGCTTATGGGATGAGAGAGATTTTTATGTGTGTATTTGTTCCATTTTGCCTCATTTCATGTGCCACAGAGGATGTGAAACCCTGACGGGTGGCCGTTTTATAATGTTATTTAGACATTTTTTTAAATAAAACGATTCTATATTTGATATGCACTGCCCAGTCAAATGTTTGGACAGACTTAAGCGAATCTTCAAAAAAAGCTTGTGCATTGATAATTGAAATTGTTGATAAATTGTGAATATGAATGAATTTGTTTACAAAACTGAAATTTGATCAAAACATTCAAACTTTTGGAGTGGATAGTGAAATAAAAGCAAAGCATCCCAGGATGAAGTTGATTGGTGAGCGATAAAGAAGCTCAAATATAAGAGAGTTTTGTTTTCGATCACTTCATCAATCCAAGTTATTTAATAGGTTTCATTACTTCACTATTTTCTGTTTATTAAGGAGCCTTGCACATGACATGCAAGAAAAAAAAAGTAAACCGTGCGGACATTTTACTATTTGGTTCCCTCGATTTACTAAATCGTGCAGACGTTTTACTAATTCATTCCCTCATTTTGCTAAATGGTGCGGACGTTTTACTATTTAATTCCTGTGAGGACGTTTTACTATTTCGTTCCTTCGTTTTGCTAAATCGTGCACACGTTTTACTATTTCATTCCCGGACGTTTTACTATTTCATTCCCTCGATTTGCTTAATTGTGCGGACGTTTTACTATTTCGTTCTCTTGATTTGGTAAATCTTGCGGACATTATTTCATTCTCTCAATTTGCTAAATCATGCACACGATTTTATAAATCGAGGTAACAAATGAGTAAATCGTGCGCAAGATTTAGCCTACTATTTTTTTCCTGCATGTCATGTGCAGGGCTCCATAGTTTTTGAATAATAGTCGTAATAAAGAACGATTTTACAATATTTCTGTTTTTAATATAGCCTATTTAGATCACATAAATTCAGCATTGATGAGCAGAAGAAATAATGAAGAACGCACAGATGTGTCCAAACTTTTGACTTGTCATGCATCTGTACTAGAATGATTCCCATTTTTTAAGATATTTTCTATCAAGCATTTTTTTTTTCACCTCATGCGAATCAAATCAAATCTTATCCAGTTTCCAAGTAACATTGTGATAATCAGAACAGGATACTACGCTGAAAGTGAATACAGTTTTCTACCCCTTCAGACCTGAGAAATTAATTCTGAATCGGTGCAGTTTGAGTTCAAACATTCGACGATAGTCCTCCTGCTGCTTTCCGGGATCCGCTGGCCCTCGAGATGTTGCTCTGTGCGTCCGGATGAGGGTTTGACCGTACAGATGTTAACGGCCCCATCTCGCATATAAACTCGCATGTGATTGGACGGATTAACTAGAGTTCCTAATATCATCTGTGCCGATAACTGTGAGATCACATTATTTTCCTCTTTATCACAAAGTTATTTGGAGACTTCACACTCGTACAGTTGATATTTAAAGCTAAAGTGTGTCATTTTGGAACGGCAAAACATTTCAAACGGGGTTCCCGAACGGGAAAATCACCGCGTTCAACCTACAAATCACTCATTTTATACAGTAATGGCCAAACGTGAAAGGGGATGTTTGTTTTTAATGACACTACAGATTCAATTAAACCATCAAAATATGAGGAAGATATTTTTAAATATGAGAAAGAGCAAAACACTAAACTTTAAGGTTGCTATTTATCTGAAAAAAAAAAAAATGTATTTGGCGCAAACTTCAGCTACAGGTTTTATTTTACTAGGCCTATACAAAAAAATAAAAAAATGCATAGAAAAACAAAAAGTTCACAGGATAAAGCATTCATTGACTACAACATGATAAGTTATTAATATTTCATTGGTTCTCTATTGTTTTGGCATGTGTTTATAATTTCCGTCATAATTCGGCGAAATTTGGCATGTTTCATCGCGTTATCACAAATAAAACAACTGACTCCAAGCTAGAGCGATTAATCGTTAAAAGATCGCGATCTCCATTTAAATACACACGTGACTTTGTTCCTAAATGACAACAAGCTTGTTCGAGATTGGCGCAGCGCAGAACGTATCAAAGTACCGCGAGAGCATATGACTCCTTATGCTTTTGAATCGCTCTCGCGGTACTTTGATATCGAGCCTAACGGTTCGCCTGTCTGTTAAACCTTTCATAAAATCACACCGAAACATTCAAACAGTCTTTTCAACCACACAGTATCATTATTTCTGTGTTCCTGATATTCAGATAATCACAGAAGTACTTATATTATAAGTGCATATAATCGCTGATATCTCCTGTAGCGATCAAAATAGAGTAACTTGGCGCTTCAAATAACGGCTATATCATCTGCATTTTTACGCCACTAGGTGGCGACAAGTGACTTAAAAATGTATGTCATTCAATCATTCATTCAAGAGATTTCGTTCTATAACACTGATTCATCCAGTAATGAAACAAGCGAAGTATTTACAAGTGAGTCATTGAATCATTCATTCAAACCGTTTTTTTTTTAAATAATTATTTCATATTAAATAAACATTTTTAAATAGACTGCAGTAATTTTTTTTTATCAGAACCTCTAAGTAAATTACATGTTATTTTGTTTAGTTAATCGTGATCTCTATTTGAAAAAAATCATCATTCTCAATTTATCCAGAATTGTGCAGCTCTACTCTAAGCAAAAGTACGCGATATGATTACAGAAACCTTTAATAATGTTTTAATAAAGGGTCAATGTCAATTTTCCTAGTCCAGACATCACTTTTGGCCACTACTGTAAGTGACTCTTCACCTTATAAGAGGATTTGTTATTAAAAAAATGTCATGCATCGCATTTAAATTCAGTCTGAATTAGATTTAAATGCATTTCATTGAATTTGACCTTTTTATTCAATGAAAACTTGAGCTTCCCACATGCAAACAGGCAGATTCATTCCTCAAATCACCTTCTTGCTAATGATGATGATTTCTTCACACTTTCTGAATGGCCTTACTAACGCTGGGCATGTTTCACAATAGTTTTTGAGTTGTTTTGCCTGTCCTGATTTAAACAGCAAGGCCTTTGACTGAAATGCCAAACGGAGAGCCTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCTCATATAGAGAGTTGGTTTCTGAGTGCCAAGTACTGTGACTATGGCGTGTCCTCTACACTGTTATTTCACAGGCTTTTTCCTATTCAAAACAAACAAACAAACAAAAAAAAAGCACAATGTCAAATGTCTTTTCTTTATATCACTGTATTTTAGCCTAGCCTTTGCTAATTTATACAAGACCAAGTGTTATTATATTTAATGCACAGCACCTGATTGAGGTGTTGCTTGTGTAACCTGTATTAAAGCCCCTTTAAAGTGTGCTGCGGTGGATGGATGGAGGTCCAGGGTCTTTTGACACCCAAACTTTTGGCAACATCTTCTATCTGGAGAAGATCCACTTCAAAGTGCACAGATGTATATTTGAAATGCTAATGTTGCATGAGATAGCCTTTACATTAAGAGAAACAAAGAGTGTGTATGTAGGGTTGGTATTTAAAATGATGCTGTGTTCGAAACGCTTAAACATTTACTTTTATAATGCCGCTAATGCTCCACGTGTTCAATGAGAATGAGGGTTTGTTGGGTTTCCAAGCCAATGAAATGGAGATTTCTACATAATTGCAGTACAGATAAACCCCAAAATGTAAATGATCTTTTAAATATTATTATTATTATTATTATAAAACCATAACTTGCATGGACTGATTACCCTATTTAAATATTAGAACTTTGAGATACCTTGTAATTGAATCAATGCCTAAATGTATGGATTTGTTGGTGCTTTTCTGCACTTTTCTCTTTTAGAAGTCTGAATGTGTAGATCTGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU800447 True 4714 lncRNA 0.39 3 1574238 1589735

Neighbor

gene id symbol gene type direction distance location
CI01180000_01554271_01567480 NA coding downstream 6758 1553905 ~ 1567480 (-)
CI01180000_01500501_01503809 NA coding downstream 69992 1499645 ~ 1504246 (-)
CI01180000_01434206_01489145 ARID4B coding downstream 85093 1433383 ~ 1489145 (-)
CI01180000_01424083_01427043 TOMM20B, TOMM20, TOMM20A coding downstream 146851 1423527 ~ 1427387 (-)
CI01180000_01369334_01369786 NA coding downstream 204206 1369004 ~ 1370032 (-)
CI01180000_01592917_01610651 LYST coding upstream 2174 1591909 ~ 1610651 (-)
CI01180000_01612108_01616924 LYST coding upstream 22373 1612108 ~ 1616924 (-)
CI01180000_01618180_01626362 LYST coding upstream 28157 1617892 ~ 1626362 (-)
CI01180000_01630692_01655733 LYST coding upstream 40957 1630692 ~ 1655733 (-)
CI01180000_01686505_01733648 NID1, NID1A coding upstream 96661 1686396 ~ 1733884 (-)
G679700 NA non-coding downstream 90094 1481788 ~ 1484144 (-)
G679687 NA non-coding downstream 141318 1431967 ~ 1432920 (-)
G679701 NA non-coding downstream 142498 1431485 ~ 1431740 (-)
G679691 NA non-coding downstream 143273 1429694 ~ 1430965 (-)
G679822 NA non-coding downstream 287143 1259390 ~ 1287095 (-)
G679897 NA non-coding upstream 9019 1598754 ~ 1599172 (-)
G679923 NA non-coding upstream 145407 1735142 ~ 1735743 (-)
G679905 NA non-coding upstream 242420 1832155 ~ 1834468 (-)
G679938 NA non-coding upstream 271503 1861238 ~ 1861443 (-)
G679940 NA non-coding upstream 273807 1863542 ~ 1941881 (-)
G679801 NA other downstream 403710 1169859 ~ 1170528 (-)
CI01180000_01776944_01781186 NA other upstream 188857 1776872 ~ 1781339 (-)
G680525 NA other upstream 1026619 2616354 ~ 2616756 (-)
G680506 NA other upstream 1181312 2771047 ~ 2851916 (-)
CI01180000_02988807_02995955 NA other upstream 1397346 2987081 ~ 2997401 (-)
CI01180000_03016426_03018342 NA other upstream 1424698 3014433 ~ 3018343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G167783 NA non-coding NC_047604.1 CM018550.1 18563971 ~ 18564379 (-)
bowfin (Amia calva) AMCG00001436 gng4 misc CM030143.1 CM030143.1 3748554 ~ 3765362 (+)