Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU800447 |
| length | 4714 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 3 |
| gene id | G679688 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 1574238 ~ 1589735 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU800459 | lncRNA | downstream | 90094 | 1481788 ~ 1484144 (-) | True | G679700 |
| TU800446 | lncRNA | downstream | 141318 | 1431967 ~ 1432920 (-) | True | G679687 |
| TU800460 | lncRNA | downstream | 142498 | 1431485 ~ 1431740 (-) | True | G679701 |
| TU800450 | lncRNA | downstream | 143273 | 1429694 ~ 1430965 (-) | True | G679691 |
| TU800586 | lncRNA | downstream | 287143 | 1259390 ~ 1287095 (-) | True | G679822 |
| TU800674 | lncRNA | upstream | 9019 | 1598754 ~ 1599172 (-) | True | G679897 |
| TU800715 | lncRNA | upstream | 145407 | 1735142 ~ 1735716 (-) | False | G679923 |
| TU800718 | lncRNA | upstream | 145665 | 1735400 ~ 1735716 (-) | False | G679923 |
| TU800719 | lncRNA | upstream | 145665 | 1735400 ~ 1735743 (-) | False | G679923 |
| TU800713 | lncRNA | upstream | 145702 | 1735437 ~ 1735743 (-) | False | G679923 |
| CI01180000_01554271_01567480.mRNA | mRNA | downstream | 6758 | 1553905 ~ 1567480 (-) | True | CI01180000_01554271_01567480 |
| CI01180000_01500501_01503809.mRNA | mRNA | downstream | 69992 | 1499645 ~ 1504246 (-) | True | CI01180000_01500501_01503809 |
| CI01180000_01434206_01489145.mRNA | mRNA | downstream | 85093 | 1433383 ~ 1489145 (-) | True | CI01180000_01434206_01489145 |
| CI01180000_01424083_01427043.mRNA | mRNA | downstream | 146851 | 1423527 ~ 1427387 (-) | True | CI01180000_01424083_01427043 |
| CI01180000_01369334_01369786.mRNA | mRNA | downstream | 204206 | 1369004 ~ 1370032 (-) | True | CI01180000_01369334_01369786 |
| CI01180000_01592917_01610651.mRNA | mRNA | upstream | 2174 | 1591909 ~ 1610651 (-) | True | CI01180000_01592917_01610651 |
| CI01180000_01612108_01616924.mRNA | mRNA | upstream | 22373 | 1612108 ~ 1616924 (-) | True | CI01180000_01612108_01616924 |
| CI01180000_01618180_01626362.mRNA | mRNA | upstream | 28157 | 1617892 ~ 1626362 (-) | True | CI01180000_01618180_01626362 |
| CI01180000_01630692_01655733.mRNA | mRNA | upstream | 40957 | 1630692 ~ 1655733 (-) | True | CI01180000_01630692_01655733 |
| CI01180000_01686505_01733648.mRNA | mRNA | upstream | 96661 | 1686396 ~ 1733884 (-) | True | CI01180000_01686505_01733648 |
| TU800565 | other | downstream | 403710 | 1169859 ~ 1170528 (-) | True | G679801 |
| TU800690 | other | upstream | 188857 | 1778592 ~ 1781285 (-) | False | CI01180000_01776944_01781186 |
| TU800691 | other | upstream | 188857 | 1781450 ~ 1781488 (-) | True | G679907 |
| TU801392 | other | upstream | 1026619 | 2616354 ~ 2616756 (-) | True | G680525 |
| TU801369 | other | upstream | 1181312 | 2771047 ~ 2851916 (-) | True | G680506 |
| TU801372 | other | upstream | 1397346 | 2987081 ~ 2993864 (-) | False | CI01180000_02988807_02995955 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00013336 | False | 228 | mRNA | 0.58 | 2 | NC_007124.7 | 49827015 ~ 49846301 (-) |
| eurasian perch (Perca fluviatilis) | TU266432 | False | 2671 | lncRNA | 0.42 | 3 | NC_053130.1 | 23376536 ~ 23389752 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU198626 | True | 285 | lncRNA | 0.51 | 2 | NC_047604.1 | 18563971 ~ 18564379 (-) |
| bowfin (Amia calva) | TU198626 | True | 6825 | lncRNA | 0.39 | 3 | CM030143.1 | 3748554 ~ 3765362 (+) |
